Comamonas squillarum: N4T19_12855
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Entry
N4T19_12855 CDS
T10846
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
csqu Comamonas squillarum
Brite
KEGG Orthology (KO) [BR:
csqu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csqu03000
]
N4T19_12855
Transcription factors [BR:
csqu03000
]
Prokaryotic type
Helix-turn-helix
Other families
N4T19_12855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
GAF
Sigma54_activ_2
HTH_8
AAA_lid_14
HTH_30
AAA_5
HTH_23
HTH_29
AAA_2
HTH_Tnp_ISL3
HTH_28
HTH_17
HTH_22
HTH_7
HTH_20
AAA
HTH_psq
AAA_16
Xre-like-HTH
HTH_11
MerR
Motif
Other DBs
NCBI-ProteinID:
UXC16632
UniProt:
A0ABY5ZRM9
LinkDB
All DBs
Position
complement(2782398..2784386)
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AA seq
662 aa
AA seq
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MDPQITSQVLRQARVHLLAHGECPPGAVQARIASSWQRSLRAGVQPVGRVSCGDPLTGSE
MRQVLTRSEDLLAIARPVMDYVFEQIQDSHSMVILANAQSTLLHTLGDAPFLNKAERVAL
RSGAIWTEEARGTNAIGTALVEATPLRVEGAEHFLEANSFLNCAASPIFSAQGQLLGVLD
ISGDQRLAQAHTLGLATTAARMIENRWLLARHQRDWRMHFHTQAEGVGTAAEGILALTPD
GLLLGGNRTAMQSLKIAAADWGHLHWDDISAMPLRDWLARGHTQTERLHLAALHTGRSVF
ARLVLPQASHATPVGAAPPALPGDRAGRAPLVAVPQPAAPDALTRLDTGDPGWRAAAERG
RRTWGKGIALLVQGESGVGKELFARALHDSSARHAAPFVAINCAAIPEHLIEAELFGYES
GAFTGARRDGQLGRLREAQGGTLFLDEIGDMPLALQTRLLRVLQERSITPLGGGKAQQLD
FALVCATHHQLREAVAQGRFRADLFYRINGLALQLPALRERSDREAITRRLLDQFNPSQP
VRLHPDLAFAMAHYPWPGNLREYANALQTASALLLPGEDTIGWSQLSDDLAQELLRYREG
APMAVAALAAQAQPPSLPATDLKTLSHTAIAQMLQQCRGNVSQAAKLLGISRQTLYRRLK
TA
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggatccccagatcacctcccaggtgctgcgccaggcacgggtgcatttgttggcacat
ggtgaatgcccgcccggggcggtgcaggcgcgcattgccagctcctggcaacgcagcctg
cgcgcaggggtacagccagtcggccgggtgtcttgcggcgatccgctcaccggctccgaa
atgcgccaggtgctcacgcgcagcgaagacctgctggccattgcccggccggtgatggac
tatgtgttcgagcagatccaggacagccacagcatggtcatcctggccaacgcccaaagc
accctgctgcacaccttgggtgacgccccttttctgaacaaggccgagcgcgtggcgttg
cgcagtggcgcgatctggaccgaagaggcgcgcggcacgaatgcgattggcacggcgctg
gtggaagccacgccgctgcgcgtcgaaggcgcggagcactttctggaggccaacagtttt
ttgaactgcgcagcctcgcccatcttcagcgcccagggccagctgctgggcgtgctcgat
atctctggcgaccagcgcctggcccaggcccataccttggggctggccaccaccgctgcc
cgcatgatcgaaaaccgctggctgctggcacgccaccagcgcgactggcgcatgcatttc
cacacccaggccgaaggggtgggtaccgccgccgaaggcattctggcgctgacgcccgat
ggtttgctgctgggcggcaaccgcaccgccatgcaaagcctcaagattgccgcggccgac
tggggccatctgcactgggacgacatcagcgcgatgccgctgcgcgactggctggcccgg
ggccatacccagaccgagcgcctgcatctggcggccctgcacaccggccgcagcgtgttt
gcgcgcctggtgctgcctcaggcatcacacgccacgccggtgggcgctgcaccgcccgcg
ctgccaggcgatcgcgcgggccgggcgccgctcgtggccgtgccccagccagcggcgccc
gatgcgctgacccggctggacaccggtgacccgggctggcgcgctgcggccgagcgcggg
cggcgcacctggggcaagggcattgccttgctggtgcagggcgaatcgggcgtaggcaag
gagctgtttgcgcgcgcgctgcacgacagcagcgcacgccatgccgcgccttttgtggcc
atcaattgcgcggcgattccggagcatttgatcgaggccgagctgtttggctacgagtcc
ggggctttcaccggcgcccggcgcgatggccaactgggccgcttgcgcgaggcccagggc
ggcacgcttttcctcgatgaaattggcgatatgccgctggcgctgcaaacccgtttgctg
cgtgtgctgcaggagcgcagcatcacgccgttgggcggcggcaaggcccagcagctcgat
tttgcgctggtctgtgccacccaccaccagctgcgcgaggcggtggcgcaggggcgcttt
cgggccgatctgttctaccgtatcaacggcctggccttgcagctgcccgcgctgcgcgag
cgcagcgaccgcgaggccatcacccgccgcttgctggaccagttcaaccccagccagccg
gtacggctgcatcctgatctggcctttgcaatggcgcactacccctggcccggcaatctg
cgcgagtacgccaacgcgctgcagaccgcatcggcgctgttgctgcccggcgaggacacg
attggctggtcgcagctctccgacgatctggcgcaggagctgctgcgctaccgcgagggc
gcgccgatggcggtagccgctttggccgcgcaagcgcagccacccagcctgccggccacc
gatctgaaaaccctctcgcacaccgccattgcgcagatgctgcagcagtgccggggcaat
gtatcacaggcggccaagctgctgggcatcagccggcagaccctgtaccgccggctcaag
acggcttag
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