Comamonas squillarum: N4T19_13090
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Entry
N4T19_13090 CDS
T10846
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
csqu Comamonas squillarum
Pathway
csqu00521
Streptomycin biosynthesis
csqu00523
Polyketide sugar unit biosynthesis
csqu00525
Acarbose and validamycin biosynthesis
csqu00541
Biosynthesis of various nucleotide sugars
csqu01100
Metabolic pathways
csqu01110
Biosynthesis of secondary metabolites
csqu01250
Biosynthesis of nucleotide sugars
Module
csqu_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
csqu00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
N4T19_13090 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
N4T19_13090 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
N4T19_13090 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
N4T19_13090 (rfbB)
00525 Acarbose and validamycin biosynthesis
N4T19_13090 (rfbB)
Enzymes [BR:
csqu01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
N4T19_13090 (rfbB)
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Ortholog
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
3Beta_HSD
Motif
Other DBs
NCBI-ProteinID:
UXC16676
UniProt:
A0ABY5ZS09
LinkDB
All DBs
Position
complement(2834248..2835303)
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AA seq
351 aa
AA seq
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MILVTGGAGFIGSNFVLDWLAGSDEPVVNLDKLTYAGNLHNLESLQGDSRHHFVHGDIGD
RALLDRLLAEHQPRAIVHFAAESHVDRSIHGPEDFIQTNVVGTLRLLEAARAYWSGLEGE
RKTGFRFLHVSTDEVYGSLEKDDPAFTETHNFEPNSPYSASKAASDHLVRAWFHTYGLPV
LTTNCSNNYGPYHFPEKLIPLMIVNALAGKNLPVYGDGMQIRDWLYVKDHCSAIRRVLEA
GRLGETYNVGGWNEMPNIEIVQHVCRLLDAQRPRADGQSYAEQIIYVKDRPGHDRRYAID
ARKLEKELGWKPAETFDSGIRKTVQWYLDHQDWVAQVQSGDYKDWVSKQYA
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgattctcgtcaccggaggcgccggctttatcggctcgaattttgtgttggactggctg
gcgggttcggatgaaccggtggtcaatctcgacaagttgacctacgcgggcaatctgcac
aacctagaaagcctgcagggcgacagccgccaccattttgtgcacggcgatatcggcgac
cgcgcgctgctcgaccgcctgctggccgagcaccagccgcgcgccatcgtgcactttgcc
gccgaaagccatgtggaccgctcgatccacggccccgaggatttcatccagaccaatgtg
gtgggtaccctgcgcctgctggaggccgcccgtgcctactggagtggcctggaaggcgag
cgcaagaccggtttccgctttctgcacgtatcgaccgatgaggtctacggcagcctggaa
aaggacgacccggccttcacagaaacccataacttcgagcccaacagcccctacagcgca
agcaaggcggccagcgaccatctggtgcgtgcctggttccacacctatggcttgccggtg
ctgaccaccaactgctcgaacaactacggcccctaccacttccccgagaagctgatccct
ttgatgatcgtcaacgcgctggcgggcaagaacctgcccgtgtatggcgacggcatgcag
atccgcgactggctctatgtcaaggaccactgcagcgccatccgccgcgtgctggaggcg
ggccgtctgggcgagacctacaacgtgggcggctggaacgagatgcccaatatcgagatc
gtccagcatgtctgccgcctgcttgacgcccagcgcccgcgtgccgatggccagtcttac
gccgagcagatcatctatgtaaaggaccgccccggccatgaccgccgctatgcgatcgat
gcgcgcaagctggagaaggaactgggctggaagccggctgaaacctttgacagcggcatc
cgcaagaccgtgcagtggtacctggaccaccaggattgggtggcccaggtgcagtcgggt
gactacaaggactgggtcagcaagcagtacgcctga
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