Comamonas squillarum: N4T19_13350
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Entry
N4T19_13350 CDS
T10846
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
csqu Comamonas squillarum
Pathway
csqu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
csqu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
N4T19_13350 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csqu03021
]
N4T19_13350 (rpoA)
03400 DNA repair and recombination proteins [BR:
csqu03400
]
N4T19_13350 (rpoA)
Enzymes [BR:
csqu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
N4T19_13350 (rpoA)
Transcription machinery [BR:
csqu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
N4T19_13350 (rpoA)
DNA repair and recombination proteins [BR:
csqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
N4T19_13350 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
UXC16723
LinkDB
All DBs
Position
complement(2887768..2888763)
Genome browser
AA seq
331 aa
AA seq
DB search
MQTNLLKPKTINVEQLGHNRAKVELEPFERGYGHTLGNALRRVLLSSMVGYAATEVTIAG
VLHEYSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGVVTAADIQTPHDVEI
INPDHIIANLSQGGKLDMQIKVEKGRGYVPGNVRRYGDESTKSIGRIVLDASFSPIKRVS
YTVESARVEQRTDLDKLVLEIETNGAIAAEDAVRSSAKILVEQLAVFAQLEGGALDVFDQ
PGGQARNNATFDPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRK
SLNEIKEVLASRGLTLGMKLENWPPAGLEKR
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgcagaccaatttgctgaaacccaagacaattaacgtagaacagctgggccacaatcgc
gccaaggtagagctggagccgtttgaacgcggctacgggcacacgctgggcaatgcgctg
cgtcgtgttctgctgtcctcgatggtgggttatgcagcgacggaagtgaccattgcaggt
gtgctgcacgagtactcgtctatcgacggcgtccaggaagatgtggtcaacatcttgctg
aacctcaagggcgtggtgttcaagctccacaaccgtgacgaagtgacgctgagcctgcgc
aaggatggcgaaggcgtggtgacggctgctgacattcagacgcctcacgatgtagaaatc
atcaaccctgatcatatcatcgccaacctgtcgcaaggcggcaagctggacatgcagatc
aaggtggaaaaaggccgtggctatgtgcccggtaacgtgcgccgctacggtgacgagtcg
accaagtcgatcggccgcattgtgctggacgcatcgttctcgccgatcaagcgcgttagc
tacacggtcgaatccgcccgtgtggagcagcgtaccgatctggacaagctggttctcgag
atcgaaaccaacggtgccatcgctgcagaagatgcagtgcgctcgtcggccaagatcctg
gtggagcaacttgccgtgtttgcgcagctcgaaggcggcgcattggatgtgttcgaccag
ccaggtggccaggcgcgcaacaacgccacgttcgatccgatcctgctgcgtcctgtggac
gagctggaactgaccgtgcgttctgccaactgcttgaaggccgagaacatctactacatc
ggtgacctgatccagcgcaccgaaaatgagttgctcaagaccccgaatctgggtcgcaag
tcgctcaacgagatcaaggaagtgttggcttcccgtggtctgaccctgggtatgaagctt
gaaaactggccaccagccggtttggaaaagcgttaa
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