Comamonas squillarum: N4T19_16170
Help
Entry
N4T19_16170 CDS
T10846
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
csqu Comamonas squillarum
Brite
KEGG Orthology (KO) [BR:
csqu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csqu03000
]
N4T19_16170
Transcription factors [BR:
csqu03000
]
Prokaryotic type
Helix-turn-helix
Other families
N4T19_16170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
HTH_30
Mg_chelatase
HTH_17
HTH_23
AAA_16
HTH_28
Xre-like-HTH
HTH_Tnp_ISL3
HTH_AsnC-type
HTH_1
HTH_IclR
HTH_psq
AAA
HTH_29
AAA_2
Sigma70_r4_2
DMA
MerR
TsaE
HTH_38
Motif
Other DBs
NCBI-ProteinID:
UXC17232
UniProt:
A0ABY5ZTC7
LinkDB
All DBs
Position
3479497..3481461
Genome browser
AA seq
654 aa
AA seq
DB search
MPIHSYTAHVQELEAFGMGYPLQGEARDRAVLGSWRRCIDQHRLDPCRTSEAHIVPAGQL
RAHREESEPLIRIARSGLERLYQQLKGLDYVLLLADRHGVAVDFLGHDSDASDLRGAGLY
LGAQWREDVAGTSAVGTCLATGEALTVHQSDHFDFTHTRLSCTAAPIYDLQGQLAAVLDL
SLLRSPAARASQQMALHLVTAAVRRVELANLMAQSGSDWVLRLAQSPDFLDVDADAALSI
DARGRIRAMTHAASRMLAAIAGLNWRQHPLLTGQPLGRFFDTDLQALPQLMRNRPAQERI
LRARDGSIWFAHALPPQPRSSAQPIPRPTLPAPLQALNTGDTAMGQVLHKAARLAPQDLP
VLLQGETGSGKEFLARALHAASGRSGAFVAINCAAIPEALLESELFGYLPGTWTGGAHKG
RTGLIEAAHQGSLFLDEIGDMPLALQAKLLRMLSESEITPLGARAPRKVDIRVISASHRP
LAELAQSGQFRADLLYRLNAAELPLPALRERSDLLALAAHLLAVMGCSLRLSEAAQAALR
AHHWPGNLRELHNALRYAAALAEQQIDLEHLPDALQRSPAVAQGRDTVSDGALADTALDG
PALRNATLEQVLAQCQGNVSEAARLLGVNRSTIHRRIQRQQLSRVFARQEGEQP
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgcccatccacagctataccgcccatgtccaggagctcgaagcctttggcatgggctac
ccgctgcagggggaggcacgcgaccgggccgtgctgggcagctggcgccgctgcatcgac
cagcaccggctcgacccctgccgcaccagcgaagcccatatcgtgcccgccggccagctg
cgcgcccaccgcgaagagtccgagccgctgatccgcattgcccgcagcgggctcgagcgc
ctctaccaacagctcaagggcctggactatgtgctgctgctggccgaccgccatggcgtg
gcggtggattttctgggccatgacagcgacgccagcgacctgcgcggcgccggcctctac
ctgggcgcgcagtggcgcgaggatgtggcaggcacctcggccgtcggcacctgcctggcg
accggcgaggcgctgacggtacaccagagcgaccatttcgacttcacccacacgcgcctg
tcgtgcaccgccgcgcccatctacgacctgcaaggccagctcgctgcggtgctggatctg
tccttgctgcgctcgcccgccgcccgcgccagccagcagatggcgctgcacctggtcacc
gctgccgtgcgccgcgtggagctggccaacctgatggcccaatcgggtagcgactgggtg
ctgcgcctggcgcagtcgcccgattttctggatgtcgatgctgacgccgccctcagcatc
gatgcgcgcggccgcatccgcgcgatgacccatgccgccagccgcatgctggccgccatt
gccgggctgaactggcgtcagcacccgttgctgacaggccagcccctgggccgctttttt
gacaccgacctgcaggcactgccgcagctgatgcgcaaccgcccggcgcaagagcgcatc
ctgcgcgcacgcgacggcagcatctggtttgcccatgcgctgccgcctcagccgcgcagc
agcgcgcagcccatcccgcgccccacattgccagcgccgctgcaggcgctgaacaccggc
gatacggccatgggccaggtgctgcacaaggccgcgcggctggcgccacaggacctgccg
gtgctgctgcagggcgagaccggcagcggcaaggagtttctggcccgcgcgctgcatgcg
gccagcggccgcagcggtgcctttgtcgccatcaactgcgccgccatccccgaggcgctg
ctcgagagcgagctgtttggctacctgcccggcacctggacgggaggcgcgcacaaaggc
cgcaccgggctgatcgaggccgcccaccagggcagcctctttctcgacgaaatcggcgac
atgccgctggcgctgcaggccaagctgctgcgcatgctgtccgagtcggagatcacgccc
ttgggcgcgcgtgcgccgcgcaaggtcgatatacgcgtcatctccgcatcgcaccggccg
ctggccgagctggcccaaagcggccagttccgcgccgacctgctctaccgcctgaacgct
gccgagctgccgctgcccgccttgcgcgagcgcagcgatctgctggccctggccgcgcac
ctgctcgccgtcatgggctgcagcctgcgcctgagcgaggccgcacaagccgccctgcgc
gcccaccactggcccggcaatctgcgcgagctgcacaatgcgctgcgctatgccgctgcg
ctggccgagcagcagatcgacctggagcacctgcccgatgcgctgcagcgcagccccgct
gtggcgcaggggcgggacacggtcagcgatggcgcattggcagataccgcgttggatggc
cctgccttgcgcaacgccacgctggagcaagtcctggcccagtgccagggcaatgtctcc
gaagccgcccgcctgctgggcgtgaaccgctccaccatccaccgccgcatccagcgccag
cagctcagccgggtgtttgccaggcaggagggagagcagccttag
DBGET
integrated database retrieval system
