Comamonas squillarum: N4T19_16230
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Entry
N4T19_16230 CDS
T10846
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
csqu Comamonas squillarum
Pathway
csqu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csqu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N4T19_16230 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csqu03019
]
N4T19_16230 (recQ)
03400 DNA repair and recombination proteins [BR:
csqu03400
]
N4T19_16230 (recQ)
Enzymes [BR:
csqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N4T19_16230 (recQ)
Messenger RNA biogenesis [BR:
csqu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N4T19_16230 (recQ)
DNA repair and recombination proteins [BR:
csqu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
N4T19_16230 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
UXC17243
LinkDB
All DBs
Position
3495013..3496941
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AA seq
642 aa
AA seq
DB search
MTSLAHTVLQDAFGYAHFRGSQQAIVDHVIGGDDALVLMPTGGGKSLCYQIPAIVRQQQG
HGTTIVISPLIALMHDQVSAMHEIGVDAAFLNSTLDYDQTRDVELQLISGGITLLYVAPE
RLNTPRFLGLLDELHAMGKLALFAIDEAHCVSQWGHDFRPEYRELTVLHQRYAGVPRIAL
TATADALTRADIVERMQLESARVFISSFDRANIRYTIVEKKDATAQLLRFIEREHDGDAG
VVYCLSRKKVEEVAQSLCDAGINALPYHAGLGAELRQKNQSRFLREEGIVMVATIAFGMG
INKPDVRFVAHVDMPKNIESYYQETGRGGRDGLPADAWMAYGYRDVVSQRSMIDESPAGD
AFKQVMRGKLDALLGLAEATDCRRVRLLAYFDEVYGQGGDYDSAHPEASAASAEKAPRYQ
CGNCDNCLSPPKTWDGTDAARKLLSTIYRAHSASQITFGASHILDIVRGKETDKVRQFGH
QQLSTFGLCQDYTEPQLRGVLRQLLAIGALATHKVQTEAGYSFETLTLCDGSRAVLRGEQ
TVELRESTAERSPSKRQRSTKPAVAAQNLGPDEQVRFINLKAWRTEVAKEHNVPAYVVFA
DATLAAIAQRNPQSLDELQGVSGIGVKKLEAYGEAVLRVCRD
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
gtgacttccctcgcccacaccgtcttgcaagatgcctttggctatgcgcattttcgcggc
tcgcagcaagccattgttgaccatgtgattggcggcgacgatgcgctggtgctgatgccc
accggcggtggcaaaagcctgtgctaccagatcccggccatcgtgcgccagcagcagggc
catggcaccaccatcgtcatctcgccgctcatcgcactgatgcacgaccaggtcagcgcc
atgcacgagatcggtgtggacgcggccttcctcaactccacgctggattacgaccagacc
cgcgatgtggagctgcagctgatttcgggcggcatcaccttgctgtatgtggcgcccgag
cggctcaacacgccgcgctttctgggcctgctcgatgagctgcatgcgatgggcaagctg
gccctgttcgcgattgacgaggcccattgcgtcagccagtggggacatgactttcggcct
gagtaccgcgagctgaccgtactgcaccagcgctatgccggcgtgccgcgcattgcgctt
accgccacggccgatgcgctgacccgcgccgacatcgtcgagcgcatgcagctcgaatcg
gcgcgcgtcttcatcagcagctttgaccgcgccaacatccgctacaccatcgtcgagaaa
aaagacgccaccgcccagcttctgcgctttatcgagcgcgagcacgatggcgacgccggc
gtcgtgtattgcctctcgcgcaagaaggtcgaagaggtcgcgcaatcgctgtgcgatgcc
ggcatcaacgccctgccctaccatgccggcctgggcgccgagctgcgccaaaagaaccaa
agccgctttctgcgcgaagaaggcattgtgatggtcgccaccatcgcgttcggcatgggc
atcaacaagcccgatgtgcgctttgtcgcccatgtggacatgcccaagaacatcgagagc
tactaccaagaaaccggccggggcgggcgcgacggcctgcccgccgacgcctggatggcc
tatggctaccgcgatgtggtcagccagcgcagcatgatcgacgagagcccggcgggcgat
gccttcaagcaggtgatgcgcggcaagctcgacgcgctgctgggcctggccgaggccacc
gactgccggcgcgtgcgcctgctggcctattttgacgaggtctacggccagggcggcgac
tacgactcggcccaccccgaggcctccgccgcatcggccgagaaggcaccgcgctaccag
tgcggcaattgcgataactgcctgagcccgcccaagacctgggacggcaccgatgccgcg
cgcaagctgctgtccaccatctaccgcgcccattcggccagccagatcacctttggcgcc
agccatatcctcgacatcgtgcgcggcaaggaaaccgacaaggtgcgccagttcggccac
cagcagctgagcacctttggcctgtgccaggactacaccgagccccagctgcgcggcgtg
ctgcgccagctgctggccattggcgcgctggccacccacaaggtgcagaccgaagccggc
tacagctttgagaccctcaccctgtgcgacggctcacgcgccgtgctgcgcggcgagcaa
accgtggagctgcgcgaaagcaccgccgagcgcagccccagcaaacgccagcgcagcacc
aaacccgccgtcgccgcacaaaacctgggccccgacgagcaggtccgcttcatcaacctc
aaggcctggcgcaccgaagtggccaaggagcacaacgtccccgcctacgtggtcttcgct
gatgccaccctggccgccatcgcccagcgcaacccgcagagcctggatgagctgcaaggg
gtgagcgggattggggtgaagaagctagaggcttatggggaggcggtgttgcgggtgtgc
agggattga
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