Comamonas squillarum: N4T19_20715
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Entry
N4T19_20715 CDS
T10846
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
csqu Comamonas squillarum
Pathway
csqu02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
csqu00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
N4T19_20715
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
csqu02022
]
N4T19_20715
02035 Bacterial motility proteins [BR:
csqu02035
]
N4T19_20715
Two-component system [BR:
csqu02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
N4T19_20715
Bacterial motility proteins [BR:
csqu02035
]
Pilus system
Twitching motility proteins
N4T19_20715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
Mg_chelatase
HTH_50
AAA
HTH_30
Motif
Other DBs
NCBI-ProteinID:
UXC18084
UniProt:
A0ABY5ZXM8
LinkDB
All DBs
Position
complement(4552459..4553973)
Genome browser
AA seq
504 aa
AA seq
DB search
MSFENTTVLVVDDEPDLRTLYELTLLREGYRVYTAGSVQEARAQLQQRRFEILITDMRLP
DGLGMELLQDLRSQGRSERAIVMTAYGSADNAVAALREGAFDYLTKPVDLKQFRQVVASA
CQGLQDAAALAPAQSAFQAAPQPGTPTRPAPPAQRELIGPSLVMQQVRERIAKVAGSMAP
ILVRGESGTGKELVAQSLHRNSQRASGPMVAVNCGAIPENLLEAEFFGARKGAYTGANQD
REGFFQAAHGGTLFLDEIGELPLSMQAKLLRAIQERKVRPLGSQQEEAVDVRIVSATHRD
LAADVQTGRFRQDLYYRLNVIDIFIPPLRERREDVPALCQALLERIASESGQPVPQLSAQ
ALHTLAGHALPGNVRELENLLLRSVALSDGAFLDVEPARADAAHPAPVHSQAAEPAPAYE
QPTPAPKAAAVAPQRLHGFAPPQDLPADLQAWLDGIERDILVRALQEFGFNRTAAANRLG
ISLRQIRYRMERLQIHDPSDGVQP
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgaaaacaccactgttctggtcgtggacgatgagcccgacctcagaaccctt
tatgagctgaccttgctgcgcgaaggctaccgggtctacacggccggctcggtgcaggaa
gcgcgcgcccagctgcagcagcgccgcttcgagattctgatcaccgacatgcgcctgccc
gatggcctgggcatggagctgctgcaggacctgcgcagccagggccgcagcgagcgcgcc
atcgtcatgaccgcctatggctcggccgacaatgccgtcgcggccctgcgcgaaggcgcg
tttgactacctgaccaagccggtggacctcaagcagtttcgccaggtggtggcgtccgcc
tgccaggggctgcaggatgccgctgcgctggccccggcgcagtccgcttttcaagcggcg
ccgcagcccggcacgcccacccggcctgcccccccggcccagcgcgaattgatcggcccg
tcgctggtgatgcagcaggtgcgcgagcgcattgccaaggtggccggcagcatggcgccc
attttggtgcgcggcgaatcgggcaccggcaaggagctggtggcccagtccttgcaccgc
aacagccagcgggccagcgggccgatggtggccgtcaactgcggcgccatccccgagaac
ctgctcgaagcggagttctttggtgcccgcaaaggcgcctacaccggcgcgaaccaggac
cgcgaaggctttttccaggcagcccatggtggcaccctcttcctcgatgaaatcggcgag
ctgccgctgtcgatgcaggccaagctcttgcgtgcgatccaggagcgcaaggtgcggccc
ctgggctcgcaacaggaagaagcggtcgatgtgcgcatcgtcagtgccacccaccgcgac
ctggcggccgacgtgcagaccgggcgctttcgccaggacttgtactaccggctcaacgtc
attgacatcttcatcccgccgctgcgcgagcgccgcgaagatgtgcctgcgctgtgccag
gcgctgctcgagcgcatcgccagcgagagcggccagccggtgccccagctcagcgcccag
gcgctgcacaccttggcaggccatgcactgccgggcaatgtgcgcgagctggaaaacctg
ttgctgcgctcggtcgccttgagcgatggcgcgtttctggatgtggagccggcccgggcc
gatgccgcgcatccggcgcccgtgcacagccaggctgcagagccggcccctgcctatgag
cagcccacgcccgcgccaaaggccgcagccgtcgcgcctcagcgcctccacggctttgcg
ccgccacaggatctgcccgccgatctgcaggcctggctcgatggcatcgagcgcgacatc
ctcgtgcgcgcgctgcaggagtttggctttaaccgcaccgcagcggccaaccgcctgggc
atcagcctgcgccagatccgctaccgcatggagcggctgcagatccatgaccccagcgat
ggggtgcagccctag
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