Comamonas squillarum: N4T19_22475
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Entry
N4T19_22475 CDS
T10846
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
csqu Comamonas squillarum
Pathway
csqu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csqu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N4T19_22475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csqu03019
]
N4T19_22475
Enzymes [BR:
csqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N4T19_22475
Messenger RNA biogenesis [BR:
csqu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N4T19_22475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
PAC2
Utp25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
UXC18412
UniProt:
A0ABY5ZWP1
LinkDB
All DBs
Position
4945224..4946675
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AA seq
483 aa
AA seq
DB search
MTNSFSNLHLAEPLAKAISEMGYASMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLP
LLQRMMVHENSSASPARHPVRALVLLPTRELADQVAQQIAQFAKHTKLRSTVVFGGMDMK
PQTLELKKGVEILVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSF
LPKKRTTLLFSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRFYAASDDDKRRVL
TKVLRERQIRQAFVFVNSKLGCSRLARTLEREGLRAAALHGDKSQDERLKALEAFKQGEV
DLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSHADARH
VSDIEKLIKKKIDVENFALDEQPQRERFNDGNRERREREAGRERDSSRSRDRRAPREDDA
QDRRERYRPAPVSRDPFFDKPYEPKAAEPAAWDANAKPAPARGPGIKPRRKVAALFKPSP
ASE
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgacaaattctttctccaaccttcatctggccgagcccctggccaaagccatctccgag
atgggctacgcatccatgactcccattcaggcacaggccatccctgtggtgctgactggg
aaagacgtcatgggtgctgcacaaactggcacgggcaagacagctgctttctcattgccg
ctgctccagcggatgatggtgcacgaaaacagctcggcatcgcccgcgcgccatccggtg
cgtgcgctggtgctgctgccgacgcgtgaactggccgaccaggtcgcccagcagattgcc
cagttcgccaaacacaccaagctgcgcagcaccgtggtgtttggcggcatggacatgaaa
ccgcaaaccctggagctcaaaaagggtgtggaaatcctggtggcgacccccggtcgcctg
ctggaccacatcgaggccaagaacgcggtgctcaaccaggtggagtacgtggtgctggac
gaggccgaccgcatgctcgacatcggttttctgcccgatctgcagcgcatcctgtccttc
ctgcccaaaaagcgcaccaccttgctgttctcggccacgttctcgcccgagatcaagcgc
ctggccggcagctacctgcaagacccggtcacgatcgaggttgcacgccccaacgaaacc
gcgtccaccgtcgagcagcgcttctacgctgcctctgacgatgacaagcgccgtgtgctg
accaaggtgctgcgcgagcgccagatccgccaggcctttgtgttcgtcaacagcaagctg
ggttgctcgcgcctggcgcgtacgctggagcgtgagggcctgcgtgccgcagcgctgcac
ggcgacaagagccaggacgaacgcctcaaggcgctcgaagcctttaagcaaggcgaagtc
gatctgctcgtctgcaccgatgtggccgcccgtggtctggacatcaaggatgtgcccgcc
gtcttcaactttgatgtgcccttcaatgccgaagactatgtgcaccgcattggccgcacc
ggccgtgctggcgcatccggtctggccgtcacgctggtctcccatgccgatgcccgccat
gtgtcggacatcgagaagctgatcaagaagaagatcgacgtcgagaactttgcgctggac
gagcagccccagcgcgagcgcttcaacgatggcaaccgcgaacgccgtgagcgtgaagct
ggccgtgagcgcgacagctcgcgcagccgcgaccgccgcgcgccgcgcgaggacgacgcg
caggaccgccgtgagcgctaccgcccggcacccgtctcgcgcgatccgttctttgacaag
ccgtacgagcccaaggccgctgagcccgctgcctgggatgcgaacgccaagccggcgcca
gcacgtggccccggcatcaagccacgccgcaaggtcgctgcgctgttcaagccttcgcca
gcatctgaataa
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