Comamonas squillarum: N4T19_22585
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Entry
N4T19_22585 CDS
T10846
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
csqu Comamonas squillarum
Brite
KEGG Orthology (KO) [BR:
csqu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
csqu03016
]
N4T19_22585
Enzymes [BR:
csqu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
N4T19_22585
Transfer RNA biogenesis [BR:
csqu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
N4T19_22585
Prokaryotic type
tRNA splicing ligases
N4T19_22585
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4402
Motif
Other DBs
NCBI-ProteinID:
UXC18434
UniProt:
A0ABY6A162
LinkDB
All DBs
Position
4976380..4977600
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AA seq
406 aa
AA seq
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MSQYNEMQVPNGVPVKMWTNGVPVEAEAQNQLANISRLPVVFKHVAVMPDVHLGIGATIG
SVVPTLKAIIPAAVGVDLGCGMMACKTTLTASDLPDNLAPIRAAIERAVPVGMTPKRYGR
DKGSWETPPEETDAAWTGLVKEFDEICEAHPRIKNTNNYKHLGTLGSGNHFIEVCLDENQ
AVWIMLHSGSRGVGNAIGTHFIELAKKDAELHQRNLPDKDLAYFEEGAAYFGDYVKAVGW
AQKFARANREVMMVRVIHALKKVITKPFETHLEAVNCHHNYVQRETHFGQEVFVTRKGAV
SARQGELGIIPGSMGAKSFIVRGKGNPESFNSCSHGAGRTMSRTKAKKLFTVEDQMRATE
GVECRKDAEVIDEIPMAYKDIDAVMAAQSDLVEVVYTLKQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaatacaacgaaatgcaagtgcctaatggcgtgcccgtgaagatgtggaccaat
ggcgtgccggtcgaggccgaagcgcagaaccagctggccaatatctcgcgcctgccggtg
gtgttcaagcacgtggcggtgatgcctgatgtccacttggggataggtgccaccatcggc
tcggtggtgcctacgctcaaggccatcatcccggcggcggtgggggtggacctgggttgc
ggaatgatggcctgcaagaccacgttgacggccagcgatctgcccgacaacctggcgccg
atccgcgctgcgatcgagcgggcggtgccggtggggatgacgcccaagcgctatggccgc
gacaagggaagctgggagacgccgcctgaggaaaccgatgccgcctggacgggcctggtc
aaggagttcgacgagatctgcgaagcgcacccgcgcatcaagaacaccaacaactacaag
cacctgggaaccctggggtccggtaaccacttcattgaagtctgcctggacgagaaccaa
gccgtgtggatcatgctgcattcgggctcgcgcggggtggggaacgccattggcacccac
ttcatcgagctggccaagaaggatgccgagctgcaccagcgcaacctgcccgataaggac
ctggcctactttgaagaaggcgccgcctactttggcgactatgtcaaagcggtgggttgg
gcgcagaagtttgcgcgtgccaaccgcgaggtgatgatggttcgcgtgatccatgccttg
aagaaggtgatcaccaaaccgttcgagacgcacctggaagcggtgaactgccaccacaac
tatgtgcaacgcgagacgcactttggccaggaggtgtttgtgacccgcaagggcgcggtg
agcgcacgccagggtgagctgggcatcatcccgggaagcatgggggccaagagctttatc
gtgcgcggtaaaggcaaccccgagagcttcaacagctgcagccacggtgccggtcgcacg
atgagccggaccaaggccaagaagctgttcaccgtcgaggaccagatgcgcgccaccgaa
ggcgtggaatgccgcaaggacgccgaggtgatcgacgagatccccatggcctacaaggat
atcgacgcggtgatggcggcgcaaagcgacctggtggaggtggtgtacacgctcaagcag
gtggtgtgtgtgaaggggtaa
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