Clostridium saccharoperbutylacetonicum: Cspa_c06440
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Entry
Cspa_c06440 CDS
T02467
Name
(GenBank) helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
csr
Clostridium saccharoperbutylacetonicum
Pathway
csr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Cspa_c06440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csr03400
]
Cspa_c06440
Enzymes [BR:
csr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Cspa_c06440
DNA repair and recombination proteins [BR:
csr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Cspa_c06440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
SH3_13
OB_YrrC
UvrD_C_2
AAA_11
Viral_helicase1
HHH_5
PIF1
Helicase_RecD
PhoH
AAA_22
HHH
DEAD
nSTAND3
AAA
SLFN-g3_helicase
AAA_28
HHH_2
AAA_23
NTPase_1
UvrD-helicase
AAA_29
UvrD_C
ATPase_2
T2SSE
NPHP3_N
SRP54
ABC_tran
SMC_N
HHH_3
AAA_12
ABC_ATPase
HTH_72
MeaB
cobW
MobB
AAA_24
AAA_16
DUF815
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
AGF54429
UniProt:
M1M911
LinkDB
All DBs
Position
702955..705183
Genome browser
AA seq
742 aa
AA seq
DB search
MEVLKGFVESIVFKSEDTGYVVCKIRSDNNLISAVGTVPFLKEGQNVKLTGYYTVHKQFG
NQFNIQDYEELLPTSLDGIEKYLSAGVIHGIGPVTAKKIIEKFGEETLGIMENHIERLME
IEGIGEKKFQIIYESYIEQQGLKDIILYFHKHGVTNNQCIKIYKKFGPNAKQIVSNNPYI
LCDEISGIGFRTADRIARSIGIQNDSEFRIQSGIKYVMNQFCAAGNTFMPIKDIIEQCEE
NLVIAKELIEKSIYDMAAEQKIVVENINGMEAGFLLQYYYCELGVTSKIITLGLQQIQTI
NSDIDFEIDVFEKEQKIQFAPSQREAIIGAFNNGIEIITGGPGTGKTTIIKAIIHIYENN
GMKVILGAPTGRAAKRMTESTGREAKTIHRLLEMGISEEDESVFERGESSPLDCDVIIID
EASMIDIILMQNLLKAIKLGTRLIVVGDVDQLPSVGPGNVLKDLIESEYIKVVRLKEIFR
QGSESLIIVNAHRINEGKMPLLNQKDKDFFFISEEHQDRIVGLIIDLISRRLPKFNTSWD
ILKDMQVLTPMRKGTLGVANLNARLQEIFNPPSKDKKEKTSRDIVFREGDKVMQTKNNYT
LKWININSYGENEGVGVYNGDLGFIKSIDEERKALTIIFDDERKVIYDFNFLDELDLAYA
TTIHKSQGSEFKVVVIPAFMGSPFLMNRNLLYTGITRAKQLVVVVGFQKALMYMINNTNS
IERYSALKYRIRDIIAKDEFEE
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggaagttctaaaaggttttgttgaaagtatagtttttaaaagtgaagatactggatat
gtggtgtgtaaaattagaagtgataataatctaattagcgcagtaggaacagttcctttt
ttaaaagaaggccaaaatgtgaagttaacaggatattatactgtacataaacagtttgga
aatcaatttaatattcaagattacgaagaacttcttccaacctctttagatgggatagaa
aaatatttaagtgcaggagtaattcatggaattggtcctgttacagctaagaaaataata
gagaagtttggggaagaaaccttaggaataatggaaaatcacattgaaagacttatggaa
attgaggggattggagaaaaaaagtttcaaattatatatgaatcgtatattgagcagcag
gggttaaaggatattatattatattttcataagcatggagtaactaataatcaatgtatt
aagatttataagaaattcggaccaaatgcaaagcaaatagtatcaaataatccttatata
ttatgtgatgagatttcaggtattggatttagaactgcagatagaattgcaaggagcata
ggaattcaaaatgattctgagtttagaattcaaagtggaattaagtatgtaatgaatcaa
ttttgtgctgccggaaacacatttatgcctattaaagatataatagaacagtgtgaggag
aatctagtaatagctaaggaattaattgagaaaagtatatatgatatggcagcagagcaa
aagatagtcgttgaaaatattaatggaatggaagctggttttttacttcaatattactat
tgtgagcttggagtaacaagcaaaataataacgttaggtttgcaacaaatacaaactata
aattcagatattgattttgaaatagatgtttttgaaaaagaacaaaaaatacaatttgcc
ccatctcaaagagaagcaattattggagcttttaataacgggatagaaataataacaggt
ggtcctggaactggaaaaactaccattataaaagctattattcacatttatgagaataat
ggcatgaaggtaatacttggagctccaactggaagagcagctaaaagaatgactgaatca
actggaagagaagcaaaaaccattcatagacttttggaaatgggtatttcggaggaagat
gaatcagtttttgaaagaggagaatcctcgccattagattgtgatgttattataattgat
gaagcatctatgattgatataattttaatgcaaaatttgctcaaggcaattaaattagga
acaagactaatagttgttggagatgttgatcagttaccatcagttggaccaggaaacgta
ttaaaagatcttatagaaagtgaatatataaaagttgtaaggctaaaagaaatatttagg
caaggctcagaaagcttgattatagtaaatgcacatagaattaatgaaggaaagatgcct
ttgttaaatcaaaaggataaggacttttttttcattagtgaggaacatcaagatagaatt
gtaggcttgataatagatttaataagcagacgacttcctaaatttaatacatcatgggat
atattaaaagatatgcaggtattgacgcccatgaggaagggaacattaggagtagctaat
ttaaacgccagactccaagaaatatttaatccaccatcgaaggataaaaaagaaaaaact
tctcgagatatagtttttagagaaggagataaagtaatgcagactaaaaacaattataca
ttaaaatggattaacataaatagttatggtgaaaatgaaggcgttggagtttataatggt
gatttgggatttattaagagtattgatgaagagagaaaagctttaacaattatttttgat
gatgaaagaaaagtaatttatgattttaattttctagatgaactagatttagcatatgct
actacaattcataaaagtcaaggtagtgaatttaaggtggttgttatccctgcctttatg
ggatcaccgtttttaatgaatcgtaatttactttacacaggaataacaagagccaaacaa
ttggtagttgtagttgggtttcaaaaggcattaatgtatatgattaataatacaaatagt
atagaaagatattcagctttaaaatatagaataagagatataatagctaaagatgaattt
gaagagtaa
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