Clostridium saccharoperbutylacetonicum: Cspa_c08530
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Entry
Cspa_c08530 CDS
T02467
Symbol
recQ1
Name
(GenBank) putative ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
csr
Clostridium saccharoperbutylacetonicum
Pathway
csr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cspa_c08530 (recQ1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csr03019
]
Cspa_c08530 (recQ1)
03400 DNA repair and recombination proteins [BR:
csr03400
]
Cspa_c08530 (recQ1)
Enzymes [BR:
csr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cspa_c08530 (recQ1)
Messenger RNA biogenesis [BR:
csr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cspa_c08530 (recQ1)
DNA repair and recombination proteins [BR:
csr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Cspa_c08530 (recQ1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Rhodanese
HHH
Cas3-like_C_2
DUF763
Motif
Other DBs
NCBI-ProteinID:
AGF54630
UniProt:
M1LP62
LinkDB
All DBs
Position
936350..938131
Genome browser
AA seq
593 aa
AA seq
DB search
MDNKQKIFYALKKYYGFETLRRGQLEIMNSILNGIDTFCLMPTGAGKSICYQIPAIILQG
ITIVIAPLISLMKDQVDNLIGAGVKATYINSTQSIDTIKKILIEAAMGEYKILYISPERL
ESKIFKDMIKDLYISQIVIDEAHCVSQWGHDFRQSYLEISNFYDSLKFKPTLSAFTATAT
EAVREDSIKLLGLKNPYVYRGDINRENLNINVLKEVDKLEILKDIIRENEGEAGIVYCAS
RKEVDELYYYLKDLGYNVGKYHGGLKDEEKERYQENFLYENIDIIIATNAFGMGIDKSNI
RFVVHFTLPQNIESYYQEIGRGGRDGEKCNCYLFYCEADISRVEYIINKSSSIKRREIQL
RQFQAMIDYCNLKECYRKYILNYFGNERKLNYCNNCSNCLNDDELKDFTRESQMILSTVF
RTKEKYGVSVLVDILKGFKGPKIIQNNLDKLTTYGIMKEYDSGFIKDLIKNLLSEGYVDL
KEGTYSMLKLNARSMKLLKSQEKLVLKILDKREPLLNKELFEALKRWRKEKAYKERIKPY
IIFSDTSLIAISNSKPKTIEELLEIRGVGIKKIEAYGKELLNIVQITDEREAK
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggataataagcaaaagattttttatgctttaaaaaagtattatggttttgagacttta
agaagaggtcaacttgaaataatgaatagtattttaaatggtatagatactttttgcctt
atgccaacaggtgctggaaaatcaatttgttatcagataccagcaataatacttcaaggt
ataacaattgtaatagcaccattgatttcacttatgaaagaccaagtagataatcttata
ggtgctggagttaaagcaacttatattaatagcacacaaagtatagatactataaaaaaa
atattaatagaagcagcaatgggagaatataaaatactatatatttctccagaacgcctt
gaatctaaaattttcaaagatatgattaaagatttatatatttcacaaattgtaatagat
gaagctcattgtgtatcacaatggggacatgattttagacagagttatttagaaatctct
aatttttatgacagtcttaaatttaaacctacactgtcagcctttacagcaacagcaact
gaagctgttagggaagattcaataaaacttttaggacttaaaaatccttatgtatatagg
ggtgatattaatagagaaaatttaaatattaatgtgcttaaagaagtagataagcttgag
atattaaaagatataataagggaaaatgaaggggaagcaggaatagtatattgtgcttca
aggaaagaagtagatgaactttattattatttaaaagatttaggctataatgttggaaaa
tatcatggtggacttaaggatgaagaaaaagaaagatatcaagaaaatttcttgtatgaa
aatatagatataattatagcaactaatgcctttggaatgggaatagataagtccaatata
aggtttgttgttcactttacacttccacaaaatatagaatcttattatcaggaaataggt
agaggtggacgtgatggagaaaaatgcaattgttatttattttattgtgaagcggatata
agtagagtcgaatacataataaataaaagttcgtcaataaaaagaagagaaattcaactt
aggcaatttcaagctatgattgattattgtaatttaaaagaatgttataggaaatatata
ttaaattactttggtaatgaacgtaaactgaattattgtaataattgtagcaactgttta
aatgatgatgaattaaaagattttacaagagaaagtcaaatgatattatcaacagttttt
agaactaaggaaaagtatggagtatcagttcttgttgatattttaaaggggtttaagggc
cctaaaataattcaaaataacttagataagcttactacatatggaataatgaaggaatac
gatagtggctttataaaagatttaattaaaaatttactaagtgaagggtatgttgattta
aaagaaggaacatattccatgctaaaactaaatgctagatcaatgaaattattaaagagt
caagaaaaattagtgttgaaaattctagataagagggaacctcttttaaataaggagctc
tttgaagccttaaagagatggagaaaagagaaagcttataaagaaagaataaaaccatac
ataattttttcagatactagtttaattgctatatctaatagtaaacctaaaacaatagag
gaattattagaaattagaggggtaggaattaagaagatagaagcttatggtaaggaatta
ttaaatatagttcagataactgatgaaagagaagctaaataa
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