Clostridium saccharoperbutylacetonicum: Cspa_c33570
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Entry
Cspa_c33570 CDS
T02467
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
csr
Clostridium saccharoperbutylacetonicum
Pathway
csr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cspa_c33570 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csr03019
]
Cspa_c33570 (dbpA)
03009 Ribosome biogenesis [BR:
csr03009
]
Cspa_c33570 (dbpA)
Enzymes [BR:
csr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cspa_c33570 (dbpA)
Messenger RNA biogenesis [BR:
csr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cspa_c33570 (dbpA)
Ribosome biogenesis [BR:
csr03009
]
Prokaryotic type
rRNA helicases
Cspa_c33570 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
GTP_EFTU_D2
SWI2_SNF2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AGF57118
UniProt:
M1MLJ6
LinkDB
All DBs
Position
complement(3658005..3659447)
Genome browser
AA seq
480 aa
AA seq
DB search
MKNGFSEFKIGEDLLKSIEGLGYKKPSEVQEKVIPEVLLNKDVIVKSQTGSGKTAAFGIP
LCEKINWEENIPQVLILTPTRELAVQVSDDISNIGRFKRIRAIAVFGKEPISEQERKLKQ
KTHIVVGTPGRILDHIDRGSLDTTKIKYFVIDEADEMLNMGFIGQVEGVIRRIPKKRVTM
LFSATIPEEIKALCERHMDRPIDISIKSQKLITDNIEHRLYYVQYDKKLEALNNILICEK
PETAVIFAKTKENVDMVFEYLKSKGYSSNKIHGGLMQKERLEVMEKFRRGEFRLLVATDL
ASRGIDIEGITHVINYDLPVEKEAYVHRIGRSGRAGAKGKAISFCANEGNNLLMDIEAYI
GFNIPVYNQLDEKEIEENKEVSIKLLKSKPKAKKEKSKVINSDITKIYLNGGKKKKIRPG
DIVGAICNIEGLSADDIGIIDVQDSVSYVDILNGKGKKVIEQLKTMTIKGKKINVDKAKK
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaagaatgggtttagcgagtttaaaattggagaagatcttttgaagtctattgaagga
cttggatataaaaagccatctgaagtacaagagaaggttataccagaggttcttttaaat
aaagatgtcattgttaagtcacagacaggaagtggaaaaacagctgcttttggtatacct
ttatgtgaaaaaataaattgggaagaaaatattcctcaagtattgattttgacaccaaca
agagaacttgcagtgcaagtaagcgatgatatttcaaatataggacgattcaaaagaata
cgagcaattgctgtttttggtaaggagccaatttcggaacaagaaagaaaattaaagcaa
aaaacacatatagtagttggaactccaggtagaattttagatcacatagatagaggaagt
cttgatactacaaaaataaagtattttgttattgatgaggctgatgaaatgctaaatatg
ggctttatagggcaggttgaaggcgttattagaagaattccaaagaagagagtaacaatg
ctattctcagcaacaatcccagaagaaataaaagctttatgtgaaagacatatggatagg
cccatagatatcagtattaagagtcaaaagttaattacagataatattgaacataggtta
tattatgttcagtatgataagaagttagaggcattaaataatatattaatatgtgaaaaa
cctgagacagctgtaatttttgcaaagacaaaagaaaatgttgacatggtttttgaatat
ttgaaatctaaaggatattcaagtaataagattcatggaggccttatgcaaaaagagagg
cttgaggttatggaaaagtttaggcgtggagaatttaggttattagtagcaacggatttg
gcatcaagaggaatagatattgaaggaattacgcatgtaataaactacgatttaccagtt
gaaaaagaagcttatgtacatagaatcgggcgaagtggtcgtgcgggtgctaaaggaaag
gctattagtttttgcgctaatgaaggaaataatttattaatggatattgaagcatacata
ggatttaatatacccgtatataatcaattggatgaaaaagaaatcgaagaaaataaagag
gtttctattaaacttttaaaaagtaaacctaaagcaaagaaagaaaagagtaaagttatt
aattcagatataacaaaaatatatttaaatggaggaaagaaaaagaaaatcagacctggg
gacattgttggagctatctgtaatatagagggtttaagtgcagatgatattggaattatt
gatgtacaggattctgtatcttatgtagatattttaaatggaaaaggcaaaaaagttata
gaacaattaaaaactatgacaattaagggtaaaaagattaatgttgataaagcaaaaaag
taa
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