Clostridium saccharoperbutylacetonicum: Cspa_c55070
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Entry
Cspa_c55070 CDS
T02467
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
csr
Clostridium saccharoperbutylacetonicum
Pathway
csr03030
DNA replication
csr03430
Mismatch repair
csr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cspa_c55070 (dnaE)
03430 Mismatch repair
Cspa_c55070 (dnaE)
03440 Homologous recombination
Cspa_c55070 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csr03032
]
Cspa_c55070 (dnaE)
03400 DNA repair and recombination proteins [BR:
csr03400
]
Cspa_c55070 (dnaE)
Enzymes [BR:
csr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Cspa_c55070 (dnaE)
DNA replication proteins [BR:
csr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Cspa_c55070 (dnaE)
DNA repair and recombination proteins [BR:
csr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Cspa_c55070 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AGF59252
UniProt:
M1N7B5
LinkDB
All DBs
Position
complement(6158573..6162151)
Genome browser
AA seq
1192 aa
AA seq
DB search
MEKEKQFCHLHLHTEYSLLDGSGKIKKLMKAAKEKGMDSIAITDHGVMYGLVDFFKAAQE
NDIKAILGCEIYVVPKSMHIKQPDKENSTYHLVLLVKNEIGYQNLMKIASIASIEGFYYK
PRVDCDYLREHSEGLIALSACLGGEVQSNLLKGNYEKAKEVALKYKDIFNGDFYLELQDH
GMEEQKKVNEDNMKLSKETGIPLIVTNDVHYINKEDSKSHDVLMCIQTAKTIDDPNRRRY
PSDQFYLKSPEEMYDMFSYVPEALENTMKIAEQCNYEYKFHESKLPKFPLEEGQDPYEYL
KDTCYKGLIERYDVFEELRNKELNYTEVNKIVENSEKAKEYVDRLEYELGVIKQMGYIDY
FLIVWDFIKFSYDHGIPTGPGRGSAAGSIVAFTLGITKIDPIKYSLIFERFLNPERVSMP
DIDSDFCYERRQEVIDYVVEKYGADNVSQIITFGTMAARLCIRDVGRAMNYSYTEVDKIA
KMIPTMLGITIEKALDLNPELKVAYDSDERIKTLIDVSMDLEGLPRHSSTHAAGVVIASK
PLVEYVPLQKNDEMIVTQFGMNTLEELGLLKMDFLGLRTLTVMSDAIKMVKENRGVDIDL
DKIDFDDKEVYKMIGEGNTAGVFQLESAGMTSFMKELKPDNLEDIIAGISLYRPGPMAEI
PRYIECKKNPDKVQYETPELEGVLNVTYGVMVYQEQVMEIVRKLAGYSMGRSDMVRRAMS
KKKHKVMEEERKNFIHGILEGDEVIVPGCIRNGISEEVANKIFDNMMDFASYAFNKSHAA
AYAVVGYQTAYLMKYYPVEMLAAMLNSIMGINEKVAYYIGIAEELGIQVLPPNINESFSR
FTVKDDKIRFGMAAIKNVGGNVVDSIVKAREEKGKFESLVDFINKMDPSAINKRAVECLI
KAGALDDFKVFRSKMLAVHEKLIENISSDKRRNIDGQISLFGTEELKNPEVSYPNIKEFN
KKNLLAMEKEMTGLYITGHPLDDYAKSLKMQTTNEISKIFSVHETLDETFEENLDEISMF
NREETLQDNDRVILGGILAGVNQKVTRNNSIMAFLKLEDLTGTIEVIVFPKTLDKVKELC
VTDSLVIVKGRLSLKEDEPPKLICESIEPLEQVNTAKVYLRVDNTEAARDLNKRLKDILA
KEYLGDTPIYIFESQQKQKFRVPKDRWVSLDSDVIIMLKETLGEENVKIIEL
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggaaaagcaattttgtcatttacatctacatacagaatatagtttgttagat
ggttctggcaaaataaaaaagcttatgaaagctgctaaagaaaaaggtatggacagcata
gcgataacagaccacggggtcatgtatggacttgtggatttttttaaggctgctcaagaa
aatgatataaaagcaattttagggtgtgaaatatatgtagtacctaaatcaatgcatatt
aagcagcctgataaagaaaattcaacttatcatttagttttattagtaaaaaatgaaatt
ggatatcaaaacttaatgaagattgcatcaatagcttcgattgaagggttttattataag
cctagagttgattgtgattatttacgagagcacagtgaaggtttaattgctttaagtgcg
tgcttaggtggagaagttcagtcaaatttgcttaagggaaattatgaaaaggctaaagaa
gtcgcattaaaatataaagatatctttaacggagatttttatctagaattacaagatcat
ggtatggaagagcagaagaaagttaatgaggataatatgaaattatctaaagaaactgga
ataccattgattgttacaaatgatgttcactatataaataaagaagattcaaaatcccat
gacgtattaatgtgtatccaaacagctaaaaccatagatgatcctaataggagaagatat
ccgtcagatcagttttatttgaaatcacctgaggaaatgtatgatatgttttcatatgta
ccagaggccttagaaaatacaatgaaaattgcagaacagtgtaattacgagtataagttt
catgaatcaaagcttccaaagtttcctttagaagagggacaggatccttatgagtattta
aaagatacttgctataaaggtttgattgaaagatatgatgtatttgaagaattaagaaat
aaagagctaaattacacagaagttaataaaattgtggaaaactctgaaaaagctaaagaa
tatgtggatagattagaatatgaacttggagtaatcaaacaaatgggatatatagattat
ttcttaattgtttgggatttcattaagttttcatatgatcatggaatacctacaggtcca
ggaagaggatcagcagctggatctattgttgcatttactttaggaattactaagatagat
cctataaagtacagtttgatctttgaacgtttcctaaatccagaaagagtatccatgccg
gatatagatagtgacttctgctacgaaagacgtcaagaagtgatagattatgttgttgag
aaatatggtgcagataatgtatctcaaataataacttttggtactatggcagctagactg
tgtataagagatgttggaagagctatgaattatagctatacagaagtggataaaattgcg
aagatgataccaacaatgcttggaattacaattgagaaagccttagatttgaatccagaa
ttaaaggttgcctatgatagtgatgaaagaataaaaacactaattgacgtttcaatggat
ttagaaggcttaccaaggcattcatcaacgcatgctgcaggggtagttatagcatcaaaa
ccattggttgaatatgtaccacttcaaaaaaatgatgaaatgatagtaacacaatttggt
atgaataccttggaagagcttggacttctaaaaatggatttccttggtcttagaacttta
actgttatgagtgatgcaataaagatggttaaagagaatagaggagtcgatattgattta
gataaaattgattttgatgataaagaagtctataaaatgataggtgaaggaaacacagca
ggggtattccaattagaatcagcgggaatgacttccttcatgaaggaattaaagcctgat
aatttggaagatatcatagctggaatatcgttatatagaccaggtccaatggctgagata
ccaaggtatatagagtgcaagaaaaatccagataaagttcagtatgaaacacctgaatta
gagggtgtgctaaatgttacctatggagttatggtttaccaggaacaggtaatggagatt
gttagaaagttagctggatattctatgggacgtagtgatatggttagaagagccatgtcc
aaaaagaaacacaaggtcatggaagaagaaagaaagaacttcattcatggtattcttgaa
ggggacgaagttatcgttccaggatgtataagaaatggaataagtgaagaagtagcaaat
aagatatttgataacatgatggattttgcttcatatgctttcaataaatcccatgcggct
gcttatgcagttgtaggttatcaaacagcatatcttatgaaatactatccagtagagatg
cttgctgctatgcttaattcaattatgggaattaatgaaaaagtagcttattatattggg
atagcagaagaattaggaattcaagttttgcctcctaatataaatgaaagtttctcaagg
tttacagttaaagatgataaaattagatttggaatggctgctataaaaaatgttggtgga
aatgttgttgacagtatagtcaaagcaagagaagaaaaaggtaaatttgagtctttagta
gattttataaacaaaatggatccatcagctataaataaacgtgcagttgaatgtttaata
aaggctggggcattagatgattttaaggtttttagatcgaaaatgcttgcagtacatgag
aagttaattgaaaatatatctagtgataaaagaagaaatattgatggacagataagtttg
tttggaacagaagaattaaaaaatccagaagtaagttatccaaacataaaagaatttaac
aagaagaatctattggcaatggaaaaggaaatgactggattatatattactggacatcct
ttggatgattacgcaaaaagtttaaaaatgcagactacaaatgaaatatcaaagattttc
tcggttcatgaaactcttgatgaaacctttgaagaaaatttagatgaaatttctatgttt
aatagggaagaaacgctacaagataatgacagggtaattctaggtggaatactagctgga
gttaatcaaaaagtaacaagaaataactctataatggcatttttaaagctagaagattta
actgggacaatagaagtaatagtttttcctaagacattagataaagtgaaagagttatgt
gtaacagatagcttagtaatagtaaaaggtagattaagcttaaaggaagatgagccacct
aaactaatatgtgaaagtatagaacctttggaacaggtaaatacagctaaggtatattta
agagttgacaatactgaagcagctagagatcttaataaaagacttaaggatatattggct
aaagaatatctaggtgacacacctatttatatatttgaaagtcagcaaaaacaaaaattt
agagttcctaaggatagatgggtatcattagatagtgatgttataataatgttaaaagaa
actttaggagaagaaaatgtaaaaataattgagttataa
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