Thermoclostridium stercorarium subsp. stercorarium DSM 8532: Cst_c13970
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Entry
Cst_c13970 CDS
T02440
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
css
Thermoclostridium stercorarium subsp. stercorarium DSM 8532
Pathway
css03410
Base excision repair
css03430
Mismatch repair
css03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
css00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Cst_c13970 (recJ)
03430 Mismatch repair
Cst_c13970 (recJ)
03440 Homologous recombination
Cst_c13970 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
css03400
]
Cst_c13970 (recJ)
DNA repair and recombination proteins [BR:
css03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Cst_c13970 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Cst_c13970 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cst_c13970 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
YceG_bac
CdgR_N
Motif
Other DBs
NCBI-ProteinID:
AGC68388
UniProt:
L7VS33
LinkDB
All DBs
Position
complement(1511167..1513341)
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AA seq
724 aa
AA seq
DB search
MIFMLDDFFLGNEAIWEVGQPDPVLVRQLSESLKLPTILVKVLVERGLTDPEAIMNFLKP
SAGNLYDPMLLPDMEKAVNRILEAKELNEKVLIYGDYDVDGITATAIMYLFLSSLGFDVS
YYIPDRIDEGYGISEAAVGYLSEHHFDLMITVDCGVTAKDRIEQIKENLALAGRKMDIII
TDHHQPDIENLPDVLALINPHLPDSIYPFDKLCGAGIAFKLVQALCNRLNLGNVYFNYID
LACLGTVADIVELTGENRVIVNIGLKKIKKCPNPGIQALLNVVEIGNASVDAYKLAFIIA
PRINAAGRMGDATRAVKLLTSSDLFYCEELARQLHNDNYTRQKIQNEIYQKAVEIIESDP
EYIKRKVIVVSGENWHKGVIGIVASMLVERYYKPCFVLSVFNDEAVGSARSIDGFNIYDA
MEYCRDLLVRYGGHEKAGGLTIKKSDINRFCAKINEFADEVLADSPMLPRLKVDADASVE
EININSAQYLMAMAPFGEGNPSPLFRLREVNVLEVMRIGADQSHLKLLLGTNQNPISAVA
FKMGCLEQFIRKNGKIDVIFEVGINEYMGRKNAEIIVKYVRMPEKLLEKNRILLKASEKV
ETLDIDPNWIYNSINNHLVNCDDIALSRQELAVLYRYFQKTGSRTYTRSQLFEIACCMDN
GTVKMNYFKVISGILILNELNIIRYSYAGNGNYVIDIADVNGKASLESSKIYSFLHSLAD
AYEK
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatatttatgttagatgatttttttcttggaaatgaagccatatgggaagtggggcaa
cctgatcccgtgcttgtaaggcagttgtcggaaagtttaaagctcccgaccattcttgtg
aaagtactggtagaacgtgggttgaccgatccggaagccataatgaattttcttaagcct
tcagcggggaatttatacgacccgatgcttttgcctgatatggagaaagcggtaaaccga
atattggaggcaaaggaacttaatgaaaaagtactgatatacggtgactatgacgtcgac
ggaattaccgcaacggcaatcatgtatttgtttcttagctcgctcggctttgatgtttct
tactatattcctgatcgtattgacgaaggctatggcatatccgaggctgcggtcgggtat
ctttccgagcatcactttgaccttatgattacggtggattgcggggttacagctaaggac
aggattgaacagataaaggaaaatcttgctttggcgggcagaaaaatggacataattatt
acagaccatcatcagcctgatattgaaaatctgccggatgtcctggctttgataaatccc
catctgccagacagcatatatccgttcgacaagctgtgcggcgcgggtatcgctttcaag
cttgtacaggcgttatgtaacaggttgaatcttggcaatgtatattttaattacatagat
ttggcatgtctcggcactgtcgcagatatagtggaacttaccggggaaaaccgtgtcatt
gtcaatattggtctgaaaaagataaaaaaatgtccaaacccgggaatacaggcattgctg
aatgttgtggaaatcggcaatgcaagtgtggatgcgtataagctggcatttattattgct
cccaggataaatgccgcaggaagaatgggagatgccacaagggccgtaaagcttttgact
tcctccgatttgttttactgcgaagaactggcaaggcaattgcataatgacaattacaca
aggcagaaaatacagaacgaaatttaccagaaggccgtggaaattatagaaagtgatccg
gaatatataaaacggaaggttattgtggtaagcggagaaaactggcataagggtgtaatc
ggtattgtagcgtcaatgctggtggagcggtattataaaccatgtttcgtattgtcggtt
tttaatgatgaagccgttgggtctgcgagaagcattgacggatttaatatttatgacgcc
atggaatattgccgtgatttgcttgtgagatacggaggccatgaaaaggcgggcgggctt
actataaaaaaatcagatataaacaggttttgcgcgaaaataaatgaattcgccgacgag
gttctggctgattcgcccatgttgcccaggcttaaggttgatgcagatgcatcggtagaa
gaaataaacataaattcggcgcagtatttaatggcaatggctccttttggtgagggaaac
ccgtctcctctgttcaggctaagggaagtcaatgtgcttgaagtaatgcggataggtgcc
gaccaaagccatttgaaacttttgcttgggacgaaccaaaacccgatttctgcagtggcg
ttcaaaatgggctgtctggaacaatttataagaaaaaacggtaaaatcgacgtaattttt
gaagtcggcattaatgaatatatgggaagaaaaaatgccgaaattattgtaaaatatgtc
aggatgcccgaaaaacttctggaaaaaaacagaattcttcttaaagcgtccgaaaaggtt
gaaacgcttgatattgacccgaattggatttataatagtatcaataatcatctggtaaac
tgcgacgacatagcgctttcacgacaggaactggctgtactttacaggtattttcagaaa
accggaagccgtacatatacaagaagtcagttatttgaaatcgcttgctgtatggataac
ggcacggtgaagatgaactatttcaaggttatttcaggtatacttattttaaatgaactt
aacataatcaggtattcttatgcgggaaacggcaattatgtgatagacattgctgacgtt
aacggcaaagcatcacttgaaagttcaaaaatttattcttttttgcacagtttggctgat
gcttatgaaaaatga
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