Cydia strobilella (spruce-seed moth): 134740725
Help
Entry
134740725 CDS
T10503
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cstb Cydia strobilella (spruce-seed moth)
Pathway
cstb03020
RNA polymerase
cstb03420
Nucleotide excision repair
Brite
Enzymes [BR:
cstb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
134740725
Transcription machinery [BR:
cstb03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
134740725
DNA repair and recombination proteins [BR:
cstb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
134740725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
134740725
NCBI-ProteinID:
XP_063529380
LinkDB
All DBs
Position
4:17067022..17070842
Genome browser
AA seq
1176 aa
AA seq
DB search
MYDTEDDQYEEEDVEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DSPPIELQAEAQHASGEIEVPPKYLLKFDQIYLSKPTHWEKDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIVKENEDPIETQHQKTFIGKIPIMLRSTYCLLSNLTDRDLTELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKTEIRSCLEHSSRPTSTLWVNMM
ARGGQSIKKSAIGQRIIAIVPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQGVALNFIGSRGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQ
KFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSE
VSMIRDIRDREIRIYTDAGRICRPLLIVENGALLLKKKHIDSLKERDYNNYGWQNLVASG
VVEYIDTLEEETVMIAMSPDDLAQIKEYAYCSTYTHCEIHPAMILGVCASIIPFPDHNQS
PRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSI
VAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQG
MRNALYDKLDEDGIIAPGIRVSGDDVVIGKTITLPENDDELEGTTKRYTKRDASTFLRNS
ETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCE
GLTPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKISSLLQEYG
YHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA
RDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGFIAIANLRNNTFECKG
CKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVVN
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacacagaagatgatcagtatgaggaggaagacgttgaagaaatttcgtctgaa
ctctggcaggaagcctgctggattgtcatcaacgcatactttgatgaaaaaggtttagta
cgtcaacaattggatagttttgatgagtttattcagatgtcagtgcaacgcatagtagag
gattcgccaccaatagaattacaagctgaagcacaacatgcttcgggagaaatagaggta
ccaccaaaataccttttgaaattcgatcaaatttacctctccaaacctacgcattgggaa
aaagatggtgctccatcacctatgatgccaaatgaagctcgacttcgtaatctgacctat
tctgctccactatatgttgacataactaaaaccattgtgaaagaaaatgaggatcccatt
gagacgcaacatcagaagacattcattggtaaaattcctattatgctgagatcaacatat
tgcttacttagcaatctaactgacagagatttgaccgagttaaatgaatgcccccttgac
ccaggtggctattttataattaacggttcagaaaaggtcttgatagctcaggagaaaatg
gcaacaaatacagtgtatgtgtttagcatgaaagatggaaagtatgcctacaaaactgaa
ataagatcatgcttggagcatagttccaggcccacgtccactctttgggtaaatatgatg
gctcgaggtggtcaaagcatcaaaaaatctgctattggtcagaggattattgccattgtg
ccctatatcaaacaggaaatcccaatcatgattgtatttagagctcttggatttgtagca
gacagagatattcttgaacacattatttacgactttgatgatcctgaaatgatggagatg
gttaaaccatcacttgacgaagcttttgtaatccaagaacagggtgttgcactcaatttt
attggatctagaggtgcccgacctggtgttactaaggagaagcgtattaaatatgctaga
gagatcttacaaaaagaaatgttgcctcatgttggagtttcagatttttgtgaaaccaaa
aaagcatattttctgggttacatggtgcacagactgttacttgcggctcttggacggcga
gagttggatgacagagatcattatggaaataagagattagacttagctgggccactgcta
gccttcttattcagaggtctgttcaaaaacttgttgaaggaagttcgcatgtatgctcaa
aagttcattgacaggggaaaagacttcaatctggagctggctatcaaaacaaaaataatc
acagatgggcttaggtactcacttgctactggcaactggggagaccagaagaaagctcat
caagctagagctggagtgtctcaggtgttgaatagattgaccttcgcttcaacactctca
catttgcggcgtgtgaactcgccaattggacgtgacggcaagttggccaaacctcgtcag
ttgcataatactctatggggaatgatatgtcctgctgaaactccagagggagctgctgta
ggccttgtaaagaaccttgctttgatggcttacatttctgtaggaagtcaaccttccccc
attctagagttcttggaagaatggtccatggaaaacttggaagaaatagctccatcagca
atagccgatgcaactaagatatttgtaaacgggtgctgggtaggtattcaccgtgatcct
gagcagttgatggctacattgcgtaagcttcgacgccaaatggatatcattgtttctgaa
gtaagcatgattcgcgatattagagacagagaaatacgaatctacactgatgctggcaga
atttgccgtccattattgattgtcgaaaatggagctttattattgaagaaaaagcacatt
gacagtctcaaagagagagattacaataattacggatggcagaatttggtagccagtggt
gttgttgaatacattgacactttggaagaggaaacagtaatgatagcaatgagccctgat
gacttggcacaaataaaagagtatgcctattgttctacatacacccattgtgagattcat
ccagctatgatattgggagtgtgtgcttcaattattccattccctgatcacaaccaaagt
cccagaaacacataccaaagtgctatgggtaaacaagctatgggagtttacatcaccaac
ttccatgtccggatggatactcttgcgcatgtgctgtattatcctcataaaccactggta
acaacaaggtccatggagtacttgagattcagagagctaccagctggtatcaattcaatt
gtagctattctatgctacactggttacaatcaggaagacagtgtcattttaaatgcatct
gctgtggaaaggggcttcttcagatcagtgttctaccgttcctataaagactctgaatca
aaacgtattggcgatcaagaagaacaatttgaaaagccaactagacagacctgtcaggga
atgaggaatgctttgtatgacaaattagatgaggatggaatcattgcccccggtattcgt
gtctctggcgatgacgtggtgataggtaaaacgataactttacctgaaaatgatgatgaa
cttgaaggaaccacaaaacgctatacaaagcgtgacgcgtccacattcttacgtaacagt
gagactggtatcgtagatcaagtcatgttgacgttaaatagcgaaggctacaagttctgc
aaaattcgcgtgaggtccgtccgaatcccacaaattggagacaaatttgcttcacgtcac
ggtcaaaagggtacttgtgggatccaatacagacaagaggacatgcctttcacatgcgaa
ggcttgacccccgacattattattaacccccatgccatcccgtctcgtatgacaattggt
cacttgattgagtgtattcaaggaaaggtctcttcaaacaaaggcgaaattggtgacgcc
acgccgtttaatgacgctgtaaacgtgcaaaaaatctcgtcccttctgcaggaatatggc
taccatctgcgaggtaatgaagtcatgtacaatggccatactgggagaaaaataaatgcc
caagttttcttagggcccacttattatcagcgtctcaagcatatggtagacgacaaaatt
cactccagagcgagaggacccgtgcagattctagtacgacagcctatggagggcagagcc
agggacggtggcctgcgtttcggagaaatggaacgtgattgtcaaattgctcacggtgca
gcgcaattcttacgtgaacgtcttttcgaggtttcagatccctatcgtattcacgtctgc
aacttctgtggttttatagccatagccaacctacgtaacaatacatttgaatgcaaaggc
tgtaagaacaagacgcagatatcgcaaattcgtctgccatacgcagctaagttactgttc
caagaactcatgtcaatgaacattgcccctagattgatggtcgtcaactag
DBGET
integrated database retrieval system
