Cydia strobilella (spruce-seed moth): 134740729
Help
Entry
134740729 CDS
T10503
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cstb Cydia strobilella (spruce-seed moth)
Pathway
cstb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cstb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134740729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cstb03019
]
134740729
03041 Spliceosome [BR:
cstb03041
]
134740729
Messenger RNA biogenesis [BR:
cstb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
134740729
Spliceosome [BR:
cstb03041
]
Complex B
Other components
Prp19-related factors
134740729
Complex C
134740729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
Mad3_BUB1_I
NRDE-2
TPR_10
PPR
ARM_TT21
DHR-2_Lobe_A
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
134740729
NCBI-ProteinID:
XP_063529391
LinkDB
All DBs
Position
4:complement(17250787..17253673)
Genome browser
AA seq
847 aa
AA seq
DB search
MPLLDGKEIEIFFSEEDLPYEEEILRNPFSVKHWLRYIEHKKGAPKHEINMIYERALKEL
PGSFKLWYNYLKLRRAQIRGRCITDPCYDHVNNCFERSLVFMHKMPRIWMDYCTFLTDQC
RITVTRKAFDSALRALPITQHHRIWPSYLSFLKKHNIPETAVRVFRRYLKLSPEDTEEYI
DYLTSINKLDEAAVKLAQIVNNENFQSKHGKSNHQVWNELCELISKNPDKIHTLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE
LSLSKKMEDVAKKPNPSEDDDIDLELRLARFEYLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEGKPHEIIDTYTEAVQTVDPKLAVGKLYTLWVGFAKFYEENDQIEDARLIFEKATQ
VSYAKVDDLASVWCEWAEMEIRHENYEEALKLMQKATVLPSRKVAYHDDTETVQMRLYKS
LKVWSMYADLEESFGSYKSCKAVYDHIIDLKIATPQIIINYGLFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGSKLERARDLFEQCLEHCPAEFAKSIFLLYAKLE
EEHGLARHAMSVYERATTAVLPEQMFEMFNIYIKKAAEIYGVPKTRQIYEKAIETLPEEK
AREMCICFSEMETRLGEIDRARAIYAHCSQMCDPRITADFWNTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSSAAQAAGTISDLAPGMKDGMRMLEAKAAEMAVANKG
NIMFVRGETQGLKESADKVVNPDEIDIDEESGNSNDEDDDTVTAPVQKKEIPAAVFGGLV
PSTSKDS
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgcctttacttgatggtaaagagatcgaaatattttttagtgaagaagatttaccatat
gaagaggaaattttaagaaacccattttcagtgaaacattggctaagatatatagaacat
aaaaaaggtgcacccaaacatgagattaatatgatttatgaaagagctctgaaggagctg
cctgggtccttcaaactgtggtacaattacctaaaactcagaagggcacaaataagaggc
cgctgtataacagacccttgctatgatcatgtgaacaattgctttgaaagatcactggtc
ttcatgcacaaaatgccaaggatttggatggattactgtacctttttgactgatcaatgc
cggataacagtcacaagaaaagcatttgacagtgctttacgggcattgccaattacccag
caccacaggatatggccttcgtacttgagttttctaaaaaaacacaacattcctgaaact
gctgtaagagtgtttagacgttatttaaagttaagccctgaagatacagaagagtatatt
gactacctaacttcaattaataaactagacgaagctgcagtcaaactggcacaaatagtg
aacaatgagaatttccagtcaaaacatggcaagtcaaaccaccaagtatggaacgagttg
tgtgaattaatttcaaaaaatccagacaaaattcatacactgaatgtggatgctattatt
agaggaggtctgaggcgctatacagatcagttgggacatttgtggaactctcttgcagat
tattatgttagaagtggcttatttgaaagagccagagacatctatgaagaagctattcaa
actgtgactactgttagagacttcactcaagtttttgatgcatatgctcagtttgaagaa
cttagtttaagcaaaaaaatggaagatgttgcaaaaaaaccaaacccatctgaagatgat
gatatagatttagaattgagacttgccagatttgaatacttgatggaaagaagattactt
cttcttaattcagttcttttaagacaaaatcctcataatgtggctgaatggcataaaaga
gttaaactttatgaaggaaaaccacacgaaattattgacacttacactgaagctgtacag
acagtagacccaaaacttgctgttggaaaactgtacacactgtgggttggttttgctaag
ttttatgaagaaaatgaccaaattgaggatgctagattaatttttgagaaagcaacacaa
gtgagctatgcaaaagtggatgacttggcatcagtttggtgtgaatgggctgaaatggaa
atcagacatgaaaattatgaagaagcacttaaactaatgcaaaaagcaactgtgctgccc
agcaggaaagttgcttatcatgatgatacagaaacagtccaaatgcgtttatacaagtca
ttgaaagtttggtctatgtatgcagatcttgaagaaagttttggtagttacaagtcttgc
aaagctgtttatgaccacattattgacttgaaaattgctactccacagataataataaat
tatggtctcttcttagaggagcataattattttgaggaagcattcagagcttatgaaaag
ggcattgcacttttcaagtggcccaatgtatatgatatttggaatacatatttgacaaag
tttttgaaaagatatggtggctctaaacttgagagagcaagagatttgtttgaacaatgt
cttgaacactgtcctgcagagttcgcaaagtctattttcctgttgtatgcaaaattggag
gaagaacatggcctggctcgacatgccatgtcagtttacgagcgcgcaaccactgcagtt
ttaccagagcaaatgtttgagatgttcaatatatacattaagaaagctgccgaaatttat
ggtgtccctaaaacacgtcaaatatacgaaaaggctatagaaacgttaccagaagaaaaa
gcgagagaaatgtgtatttgtttctctgaaatggaaactcgtcttggcgaaattgacaga
gctcgagccatatacgcacattgcagccaaatgtgtgatcctagaataactgccgacttt
tggaatacatggaaagaatttgaagtccgtcatggtaatgaggatacaatgcgtgaaatg
cttagaataaagagaagtgtacaggccacatacaatactcaagtgaatatgatgtctgct
cagatgttaagttccgccgcccaggcagcgggcactatttccgatttggcaccaggaatg
aaggatggcatgagaatgttagaagccaaggcagctgaaatggctgttgcaaacaaagga
aatattatgtttgtgcggggtgaaacacaaggcctcaaggagagtgcagataaggtggtc
aatcctgatgaaattgacattgatgaggagtctggaaatagtaatgatgaagatgatgat
actgtaacagctccagttcagaagaaagaaataccagctgctgtatttggagggcttgta
cctagcactagtaaagatagttag
DBGET
integrated database retrieval system
