Cydia strobilella (spruce-seed moth): 134742053
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Entry
134742053 CDS
T10503
Name
(RefSeq) spatacsin
KO
K19026
spatacsin
Organism
cstb Cydia strobilella (spruce-seed moth)
Brite
DNA repair and recombination proteins [BR:
cstb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
134742053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
134742053
NCBI-ProteinID:
XP_063531050
LinkDB
All DBs
Position
6:8096819..8116986
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AA seq
1948 aa
AA seq
DB search
MEGLTQNEKTIWSCWEEKSARDVVREAANKGSHINLAVKYLMHKNSWNEDTARDWFMAEV
RTWTIQLLLRKQIFKVLHVLNKVGIDPAEHLMDLAQSSPEIEYRDFIVQHLDKLSLDLKG
DTVTRWQDFKRHWMLLQYLEKSFESEGTFKQNKVFGAGKNRIIVNESEIKALTIEKIQAC
SQQWKSKIASALFLDSFEFSLLDFSTPLEMWNHLVEQNKAMILIRWINLQMSEVVRDMNA
RYNFFNNDSFVKKLLNVDTKGFPDEVLDTLDEIFRKWPITDEMIASISNSSCYEYTKMCI
YDTLCSYGIVNDNETSDLNKIIARLARTKNLKLIDDIFTESCSNITKQHFYVELAKYCVK
NKLYKVLTMCVEGNILDTDLSNVEQEAKDCINLWLLFKSIEQTSDRQSHVVPVYKTCQQI
AKDDIDNYICSNPHLVLGMILLEDGANLFDVFSNDEFITFKDFKLPNKGYKEKLPHLHNV
YKKYLDTNPFYESKDVSVYQLLSGYRGLDVSKIFEFQLINQNTSTVLCDKADRRSLGSLL
ANDVQVNASCVKALSQKSVDMPDFANEKLMKRYGYVAKLSHIYYLKQYRPCNASQAFVVQ
QYQMYNRLQDKSIKSACCEAHAVALQHWDDPAMVACAISFVAMIGCNPTRCRVHMTAARM
IKEYLIYQKGYNQDKANKTVNDYMSKLIQSSDDAAKDILENLEEITMHTIQSKKNADGEV
EMSVALFESQTLIKFAMLHNLPLPENLLRDFVKRGSWFNFLLFGDVFRYPLSQMLKLSQE
FEQKSYAEHLKYIMMNRNVEEGSEKDCKTNSTNGQRRLNRLSSSEVSPSGSVTFEFPSRG
VSRELWEVAAACHGPEDPPAALIRSAHLCREPLLVLLAGCYEPNAVFVLWAQWLLSSLAT
PAPDSALLATQQNVSPDQFQLVAELCLREGYVTTVHEAMLVFMPESPLALLTAFLCRTLK
QRIFDCQTSKTLASFLQLCQRRYSVDANGLPSRLSKEAYQRFATALVKIALSQGFDSAFH
QREFLKCLAVAQFGKGFSVPSPNFVTLHEILQISMETPTVVDVSKMLQDDSGQYLLQCVE
SYTASRNYDVALKIAKLASVPVNDILMAEWAHKHETLLMKEDAVDNKEWTLFIAKCSEAF
KKAAVTFNDATDFLVYYVNEINDTVQKFYAYRIIMSWFEENLEYGQKRERIEHLMWDAYF
KSDSQNEVFLNSYQSTLHFILNGQKDQSLSRKIGVVDTEKPFSMELREIEVESDVGNIEN
VVMLEDVEAVENWRRVINQLLELKLLVDAFRLSALFKVPSEHMYRSPPCPVQIIRTCLKL
AEGTCLPYDLPQELRLVISSPYLQNKLTTSGISDASFEELVIIQEKQENATEGCQLAARE
DADRLTALEALAARSGLSIAKHIAAYYRIALHIGWQYTAVLKYRGLSVDFINLVSGRTRM
SLANLVFRTFNIPSKQIAEYLCHEMVAAIICPHLVKTSTFRQKEHFQYTLWGYALNSDIE
MFLNMRPDCCSHIGRLILDHLMAFRKIYKSGATPVPESTLDDSCLDLETLTDEEYSNVES
EEVESAITDGGTLNSAETASVYSTVSTVYTVGSKMTKDTRRNLFDVISRSNIHIRYEVKS
NIRKITKGAKLSTKQVNIISIELLVVAHECFSCACDTEGVAVVLRSAQALTAQLLAARSW
RLMVRLLTGLARYTEMAYVFQVLRDKHQFEFLLGQFDFMLGQQKEKITEFKQGLLDYLKT
HCPGDTDTYIMVALHFNMYSEAANVKRKQALDLISDLEKLAIESAPKGSSRKPSLPVWVM
IHDNNVTRSMLETALNHSTDAAELYLQGGCTGFAGEMAALAQNIALQMSLLNASPTRLIL
NKSTEQMYKLVSEYLSFMEGLVLLAQRGAAAWRELAYRRALGNDQAYLRDCAAYRPDVAH
DFLTRYKTERNKTAVSQAAMTELRNLLR
NT seq
5847 nt
NT seq
+upstream
nt +downstream
nt
atggaagggttgacccagaacgagaaaactatttggtcgtgttgggaagagaagtcagca
agagatgtggtccgcgaggctgcaaataaaggcagccacataaacttggctgttaaatac
ttgatgcataagaactcgtggaatgaagacactgcaagagattggtttatggctgaagtc
agaacctggacaatccaacttctattgagaaaacaaatcttcaaagtacttcatgtctta
aataaagtcggtatagatccggcagaacatctcatggatctcgctcagtcttcaccagaa
attgaatatagagattttatagtccaacacctagacaagctatcgctggacttgaaaggt
gatacggtgacaaggtggcaagacttcaagagacattggatgttgctacaatacttagaa
aaatcctttgaaagtgaaggcactttcaagcagaataaagtctttggtgctggtaaaaat
agaattattgtaaatgaaagtgaaataaaggcattgactatagagaaaatacaagcttgt
tctcagcaatggaagagcaaaatagcttcagctcttttcctggattcattcgagttctct
ctcttggatttctcaacaccattagaaatgtggaaccatcttgtagaacaaaacaaggct
atgattttaatccgttggatcaacttgcaaatgtcagaagtagtgagggacatgaatgcc
cgatacaatttctttaataatgacagctttgtcaaaaaactcctcaatgttgacactaag
ggctttccagatgaggttcttgatacattggatgaaatttttcgtaaatggcccatcact
gatgaaatgatagctagcatctctaacagtagctgctacgaatacactaaaatgtgtatt
tatgatacactgtgttcctatggcatagtcaatgacaatgaaactagtgacttgaacaaa
ataatagccagattagcacggactaagaatctgaaacttattgatgatattttcactgaa
tcttgctctaatattactaaacaacatttctatgtagaattagcaaagtattgtgtgaaa
aataaattgtataaagtgttgacaatgtgtgttgagggcaatatacttgacacagatctc
tctaatgttgagcaggaggccaaggactgcataaatctttggctattgtttaaaagcatt
gaacagacctcagacaggcagagccatgtagtgcccgtgtataagacttgccagcagata
gccaaagatgacattgacaactacatatgctccaatcctcatctagtccttggtatgatc
ctccttgaagatggagcaaacctattcgacgtgttttcaaacgacgaattcattacattt
aaagactttaaattgccaaataaaggttataaagagaagcttcctcatttacacaatgtt
tataagaaatatttagacacgaatccattttatgagtctaaagacgtcagcgtgtatcaa
ctgctttctggttaccgcggtttagatgtatcgaaaatattcgaattccaattgattaat
caaaatacttccactgtactatgtgataaagcggaccgccgcagtttgggcagccttcta
gcgaacgatgtgcaagtgaacgccagttgcgtaaaagcattgtcacaaaaatccgttgac
atgccggattttgcgaatgaaaagctgatgaaaagatatggttatgtggcgaaattgagt
catatttactatttaaagcagtaccgtccgtgcaacgccagtcaggcatttgttgtgcaa
cagtatcagatgtataatcgcctgcaagataaaagtataaagagcgcttgctgcgaggct
cacgctgtagctttacagcactgggatgacccagcaatggtagcctgcgccatatcattc
gtggccatgatcggctgtaaccctacacgatgcagagttcatatgaccgcagcacgcatg
ataaaagagtacttaatatatcagaagggatataaccaagacaaagctaacaaaacagtg
aacgattacatgtccaagcttatacaaagcagcgatgatgcggcaaaggacatattggag
aaccttgaagaaataactatgcacacgatacaaagtaaaaaaaatgcagatggtgaagta
gaaatgtcagttgcgctgtttgaatcccaaacgttgataaaattcgcaatgcttcacaat
ctgccgttgcccgaaaatttacttcgggattttgtaaaacgtggctcttggttcaacttt
ttattattcggcgacgtattcagataccctttgagtcaaatgttgaagctctcgcaagaa
ttcgagcagaaatcttacgctgagcatttgaagtacatcatgatgaataggaacgtggaa
gaaggctcagagaaggattgcaagaccaactctaccaatgggcaaagaagattaaataga
ctgagttcttctgaagtgagcccgagcggcagcgtgacattcgagttcccgtctcgcggt
gtatcccgtgagctgtgggaagtggcggccgcttgtcatgggcccgaggacccgcccgct
gcgctcatccgctccgcgcatctctgtcgcgagcctctactcgttctgcttgctggctgc
tatgagccgaacgcggtgttcgtattatgggcgcaatggctgctatcctcactagccacc
ccagcgccggacagcgctctactcgcaacgcagcaaaacgtctctcccgaccagttccaa
ctggtcgcagagctgtgtctgagagaaggctacgttactacagtacatgaagccatgctg
gtctttatgccggaaagtccgttagcactactgacagcgtttctctgccgcactctaaag
cagcgcatattcgactgccagaccagcaaaactctagccagcttcctccaactctgccaa
cggcggtacagcgtcgacgccaacggtttacccagccggctgtctaaggaggcttaccag
agatttgctactgcgttggtgaagatagcgcttagccagggatttgatagcgcttttcat
cagagggagtttttgaaatgtttggctgttgcgcagtttggaaaaggattttcggtgcct
tctccaaacttcgtaacattacatgagatccttcaaatatccatggagacgccgacagtc
gtggatgtgtctaaaatgctgcaagacgactcgggccagtacttactccagtgcgttgag
agttacactgccagcagaaactacgacgtcgctctcaaaatagccaagctggctagtgtc
cccgtcaacgacatcttaatggccgaatgggcgcataaacacgaaacgctcttaatgaag
gaagatgccgtcgacaacaaggaatggactctcttcatagctaaatgcagcgaggctttt
aaaaaagcagcagtaacattcaacgacgctacagacttcttagtgtattacgtgaacgaa
atcaatgatactgtgcagaagttctacgcatatagaatcatcatgagctggttcgaggag
aacttagagtatgggcagaaaagagagcgaattgagcatttaatgtgggacgcctatttc
aaaagcgattcccaaaacgaagtgtttttaaacagttatcagagtactctgcattttata
ttgaacggacaaaaagatcagagtttatcgaggaagataggagtcgttgatacggagaag
cctttttcgatggaactgcgagagattgaagttgaatctgacgttggtaacattgaaaat
gtagttatgttagaggatgttgaagcggtagagaactggagaagggttattaaccaatta
cttgagttgaagttgcttgtggatgcgtttcgtctctccgcgttattcaaggtgccttca
gagcacatgtacaggagcccgccgtgcccggtgcagatcataagaacgtgtctgaagtta
gctgagggcacgtgcctgccgtatgatttgccgcaggaactgagattagttatctcgtcg
ccgtacttgcaaaataaattgaccacatcaggcatatcagacgccagttttgaagagctt
gtaataatccaggaaaaacaagagaacgcaaccgaaggctgccaactagcagccagagag
gatgccgaccgcctcaccgctttagaagccctagctgcccgtagtggcctctctattgcc
aaacacatcgctgcttattataggatagcgttgcatatcggctggcaatatacggcagtg
ttaaagtataggggattgtcggtggattttataaatttggtcagcggacgcactcgaatg
tcgctggcgaatctagtgttcaggacgttcaacattccatctaagcagatagctgaatac
ctgtgccacgaaatggtagcagcaataatctgcccccacctagtgaagacttctacgttc
cgtcaaaaggagcatttccaatacacgctctggggctacgctctcaactccgacatcgaa
atgttcctcaacatgcgacccgactgttgcagtcacatcggaagacttatactcgaccat
ttgatggcttttagaaagatttacaagtctggtgcaacaccagtccctgagagtacttta
gacgatagttgtctggatttagaaacgctaaccgacgaagaatattcgaatgtcgaaagc
gaggaagtagagtctgctataactgatggaggtactttaaactcggccgagacggcgtct
gtgtattccacggtatcgactgtgtacacggtcggaagtaagatgacgaaagatactagg
aggaacttatttgatgtgatttctaggagtaatatacatattcgctatgaagtcaaatcg
aatattaggaagattactaagggcgctaagctatcgacaaaacaggtgaacataatatcg
atcgagctgctagtggtggcgcacgaatgtttctcgtgcgcgtgcgacacagagggcgtg
gcagtcgtgctgcgctcggcgcaggcgctcacggcgcagctgctcgcggcgcgctcctgg
cggctcatggtgcgtctgctaactggcctggcacggtacaccgagatggcatacgtgttc
caagtgctacgcgacaagcaccagttcgaattcctactggggcagttcgacttcatgctg
ggacagcagaaggagaagattacagagttcaaacagggtttgctagactatctcaagacc
cactgtcccggcgacacggacacctacataatggtggcgctccacttcaacatgtactcc
gaggcggccaacgtgaagcggaaacaggccctcgacctcatctccgacttggagaagttg
gctatagagtccgcgccgaaggggagctcgaggaaacccagcctaccggtgtgggtgatg
atacacgataataatgttaccaggtcgatgctcgaaacagcgctcaaccacagcaccgac
gcagccgaactgtacttgcaaggcggctgcaccggcttcgctggcgaaatggcggcacta
gcgcagaacatagcgcttcagatgtcgctgctcaacgcgtcgcccacgcgactcatactc
aacaagagcacggagcagatgtataaactagtgtcggaatatctcagtttcatggaaggc
ctcgtgttgctggcgcaacgaggagccgcggcgtggcgcgagctagcatatcgtcgcgca
ctcggcaacgaccaggcttacttgcgcgactgcgccgcctaccgccccgacgtggcgcac
gactttctcaccagatacaaaacagagaggaataaaactgccgtatcgcaagcagccatg
acagagctccggaatcttcttcggtga
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integrated database retrieval system
