Cydia strobilella (spruce-seed moth): 134742228
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Entry
134742228 CDS
T10503
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cstb Cydia strobilella (spruce-seed moth)
Pathway
cstb03040
Spliceosome
Brite
Enzymes [BR:
cstb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134742228
Spliceosome [BR:
cstb03041
]
Complex C
Other components
Step II factors
134742228
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
Flavi_DEAD
Sigma54_activ_2
nSTAND3
AAA_30
AAA_16
TsaE
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
134742228
NCBI-ProteinID:
XP_063531314
LinkDB
All DBs
Position
6:19560293..19568973
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AA seq
1250 aa
AA seq
DB search
MDEVAKLEHLSLVSKICTELDNHLGLNDKDLAEFIIDLADKNPTFDAFKKALTENGAEFS
DSFMTNLLRIIQHMKPTNSKPETNEKEIVNKNPLANKFPGLAIPNEKPVFSSDEESEDEK
DKKKRLTTKEIFKDEKNKSSNDNVVDQTMAELEALAPSNSGTKKAEGKKEDDRKRVRSSS
IDRKDGRSRRRDGSRDRRRSRSRHRRSRSRDKRSRSRDRRSRSRDRRRRSRSRQRHRSKS
RDKDRRRRSRGRRSKSRERRSPSRDRDQKDRYGDFGKKVRRKSPEVEMSDDPEPGKIYNG
RVANIVPFGCFVQIEGVRKRWEGLVHISQLRNEGRVTNASDVVSRGDKVKIKVLSVTGQK
VSLTMKDVCQDTGKDLNPTSHAHLEAEREGRNPDRPAPAAAVLAGLQGALDPDDDSSRKR
VTRVSSPERWEIKQMISSGVIDKSELPDFDEETGLLPKEEDGEADIEIELVEDEPPFLQG
HGRALHDLSPVRIVKNPDGSLAQAAMMQSALAKERREQKMIQREAEMESLPTGLNKNWID
PLPESDGRALAANMRGTGITPQDLPEWKKHVIGGKKSSFGKKTNLSLLEQRQSLPIYKLR
DELTKAVSDNQILIVIGETGSGKTTQITQYLAECGLTARGKIACTQPRRVAAMSVAKRVA
EEFGCRLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLMDLDLKSYSVIMLDEAHERT
IHTDVLFGLLKQAVQKRPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKE
PETDYLDASLITVMQIHLREPPGDVLLFLTGQEEIDTACEILYERMKSLGPDVPELIILP
VYSALPSEMQTRIFEPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGM
DSLVVTPISQAAAKQRAGRAGRTGPGKCYRLYTERAYRDEMLPTPVPEIQRTNLATTVLQ
LKTMGINDLLHFDFMDAPPVESLIMALEQLHSLSALDQEGLLTRLGRRMAEFPLEPNLSK
ILIMSVALQCSDEILTIVSMLSVQNVFYRPKDKQALADQKKAKFNQPEGDHLTLLAVFNS
WRNNKFSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVVSAAKNTVRIQKTICSGF
FRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTTIDPK
WLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVRRRRN
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagttgctaaattagaacacttgtccttggtgtcaaaaatatgcacagaattg
gacaatcatttaggattgaatgacaaggatttggccgagtttataattgacttagcagac
aagaaccctactttcgacgcattcaagaaggctctcacagaaaatggggctgaattctca
gattcattcatgacgaatttgcttcggatcatccagcacatgaaaccgacaaactctaag
cctgaaactaatgaaaaagaaatagtgaataagaatcccttagccaacaagtttccaggc
ctggctatacccaatgagaaaccagttttctcgtcagatgaagaaagtgaggatgaaaaa
gataagaaaaaaaggcttacaacaaaagagatattcaaggatgagaaaaacaaatcttca
aatgacaatgtagttgatcaaactatggcagagttagaagcattagctccatctaattct
gggactaaaaaggcagagggtaagaaggaggatgatcgcaaaagagtacgcagtagcagt
atagatcgtaaagatgggaggagtaggaggagagacggttctagggacaggagaagaagt
aggagcagacataggagaagtcgcagtagagataaaagaagcagaagcagggacagaagg
agtagaagtagggatagaagacgtaggtctaggagcagacagcggcacagatccaagtcc
agggacaaggacagacgcaggaggtcacggggcaggcgctccaagtctcgggagcgcagg
tctccttctcgtgacagagatcagaaggatagatatggtgactttggcaagaaagttaga
agaaagagtcctgaagttgaaatgagtgatgacccagagccaggaaagatatacaatggg
cgagtggcgaatatagtcccttttggctgcttcgtccaaatagaaggagtgaggaagcgc
tgggaggggctggtacacatctcacagctgcgtaatgagggccgcgtcaccaatgcgtct
gatgtcgtctctcgcggggacaaagtcaagatcaaagttctgtcggtcactggacaaaag
gtatctctcacaatgaaggatgtctgccaggacacaggcaaggatctcaaccccacatca
cacgcgcatttagaggcggagcgcgagggccgcaacccggaccggccggcgcccgcggcc
gcggtgctggcggggctgcagggcgcgctcgaccccgacgacgactccagccgcaagcgc
gtcaccagggtctccagtcccgagcggtgggagatcaaacagatgatatcatcaggcgta
atagacaagagcgaactaccggacttcgatgaagaaaccggtctactgcccaaagaagag
gatggcgaagccgacatagagatagaactagtagaagacgagccacccttcctacagggc
cacgggagagcgctccatgatctatcccctgtaaggatagtcaagaaccccgacggttca
ctagcacaagctgccatgatgcagtcagctttagcgaaagaaagaagggaacagaagatg
atacagagagaggctgaaatggaaagcttacctaccggcttgaacaaaaactggatagat
ccgctaccggaatctgatggtagagccttagcagccaatatgaggggtactggtatcacg
ccgcaggatttaccagagtggaagaagcatgtgattggagggaagaaatcttcgtttggt
aagaagacgaatttgtcactgctggagcagaggcaatcgctcccgatctataagctgagg
gatgagttgactaaggccgtctccgacaaccaaatcctcatagtgatcggcgagaccggg
tcaggcaagacgacccaaatcacccagtacctcgccgagtgcggcctcacggcgcgcggc
aagatcgcctgcacgcaacccaggagggtcgccgccatgtccgtggctaaaagagtggct
gaggagtttgggtgccgactgggacaagaagttggttacactattcgatttgaagactgc
accagccctgagactgttatcaagtacatgacagacggcatgttgctccgcgagtgcctc
atggacctggacctaaagtcctactccgtgatcatgctggacgaggcgcacgagcgcacc
atccacaccgacgtcctcttcggcctcctcaagcaagccgtgcaaaaacgacccgaactc
aaactcattgtcacctccgccactctggacgctgtcaaattctcccaatacttctttgag
gcaccaatctttactatccctggcagaactttccccgttgaagttttatacactaaagaa
ccagaaactgattacttggatgcttcattaataacagtcatgcagatacatttgagagaa
ccgcctggagatgtactcctctttttgaccggtcaagaggagattgatacggcatgtgag
atactctacgagaggatgaaatctctaggccctgatgtgcctgaactgatcattttgcca
gtgtattccgccctgccttcggaaatgcagacccgtattttcgagcccgccccgcccggg
tcccgtaaggtggtgatagctacgaacattgcggagacttctttgactatagacgggata
tactatgtggtggatcctggttttgtgaagcagaaggtgtataattcgaagaccggtatg
gactcgctggttgtcacgccgatttcgcaggccgccgcgaagcagcgcgccggacgcgcc
gggcgcaccggccccggcaagtgctaccggctctacaccgagcgcgcctaccgcgacgag
atgctgcccacgcccgtgccggagatacagcgcaccaacctcgccaccaccgtgctgcag
ttgaagactatgggcatcaatgatctactccacttcgactttatggacgcgccgccggtc
gagtcgctcattatggccctagaacaactgcactcgctgtccgcgttggatcaggagggg
ctgctgacgcggctcggtcgcaggatggccgaattccctctagaacccaacctctcgaag
atcctaatcatgtccgtagccctccaatgctccgacgagatcctcaccatagtgtccatg
ctcagcgtccagaacgtgttctaccggccgaaggacaagcaggccctcgccgaccagaag
aaagccaagttcaaccagccggagggcgaccatctgacgctgttggctgtgttcaacagt
tggaggaataataagttttcgaacgcgtggtgctatgagaacttcgtgcagattcggacg
ctgaagcgggcgcaggatgtgaggaaacagctgcttgggattatggacaggcacaaattg
gacgtagtctctgccgcgaagaacaccgtccgcattcagaagacgatctgctccgggttc
ttccggaacgcggccaagaaggaccctcaggagggctaccggactctggtggacagccag
gtggtctacatccatccttccagcgcgctttttaacagacagcccgagtgggtaatctac
cacgagctagtccaaacgacgaaggagtacatgcgggaagtgacgaccatcgaccccaag
tggctcgtagagttcgcgcccgccttcttcaagttctccgaccccaccaagctgtccaag
ttcaagaagaaccagcgtctggaaccgttgtataataagtacgaggagcccaatgcgtgg
agaatatcgcgtgtgcggcgtaggaggaactag
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