Cydia strobilella (spruce-seed moth): 134744721
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Entry
134744721 CDS
T10503
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
cstb Cydia strobilella (spruce-seed moth)
Pathway
cstb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cstb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
134744721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cstb03400
]
134744721
DNA repair and recombination proteins [BR:
cstb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
134744721
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
134744721
NCBI-ProteinID:
XP_063534710
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All DBs
Position
10:12311415..12357430
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AA seq
914 aa
AA seq
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MSSTQPIHALNLDSVQQQAFIKYFSALPDKPLTTVRIFDRNEYYSVHGVDATTCSREVFS
SIANIKKMGLEPNKLDYLVLSKGNFEILIKKLLLVRRYRVEIYVAEGSVKNSEWVIQYKG
SPGCLSQLEEVLGEGLGSTDDSTPCLMAVNIKTDPVTKGRLVGVACVTAGDYELSVTEFT
DDDLLTELETITVQMAPSECLVPLAEHEDYKSLKKVMERASVTVTKLKRSEFTTEGLMQD
LNRLLKFKPEQQQDANAFEETRKEVAMSCLAAAIKYVSLMTDNTNFGRFRLTTIKSDMFL
HLDAAALSALNVLPELGDAPAPSRSLLGLLDHCRTQQGKRLLAQWLRQPLRDINLINERL
DVVCLLVGNSALRLQLHDDHLRRLPDLRALARRLTRRKANLHDCYRIYQAIKRLPALLHC
LSEADDATVHSSIAEPISELNEDLGKFQEMIETTVDMEAVDRGEFLVNPSFDEQLQALRA
ELDNLQSSADKELNKAARDLGLDAGKTIKLESTPNGFCFRVTMKEEQALRNNKKYTIIDA
VKGGVRFKNGKLGDLTEEYVHTRTNYEKEQDKVVAEIVGIASGYSECLFCLSHVLSRLDV
LVSFAVAAVSAPEPYCRPVVTENIDEFVLKDLRHPCLEVQEGVSFIPNDVVFKRDSCLMH
IVTGANMGGKSTWMRSCGAALLLAHAGSAVPAAAATVPRLRALCARVGAADREQQGQSTF
MLEMIESATILKTATPDSLVLIDELGRGTSTYEGCGIAWAIAEELATKCKCFCLFATHYH
ELTRLPSLHRNVIVNSHAEASVVDQQLLLLHKIAPGPATHSLGLHVAKLADLPDSIIEYA
ETKQAELETNLFEAASIEDRESEAGQALILEFLRQCKQLEASNLSNEVLVKEIGALKNNL
LKQDNKYIQALMAN
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaacgcaaccaattcatgcactaaacctagactcggtgcagcagcaagccttc
attaaatattttagtgcattaccagataaaccgctcacaacagtcagaatcttcgaccgc
aatgagtactacagtgtgcacggtgtggacgcgaccacctgctccagggaggtgttctcg
tccatcgcgaacatcaagaaaatgggcctcgagcccaacaagctcgactatctcgtgctt
tccaaaggaaacttcgagattctcatcaagaaactacttttagtacgacgctaccgtgta
gaaatatacgtagcggaaggatcggtgaagaacagcgaatgggtgatccagtacaaaggc
tcaccgggatgcctgtcacagttagaagaagtgcttggcgagggtctgggctcgactgat
gatagcacgccttgtttgatggcggttaatatcaagactgatcctgttaccaagggacga
ctagtcggcgtggcatgcgtcacagcgggcgactacgagttgtcggtaactgagttcacc
gacgacgatttgctgactgagttggaaacgatcacggtccagatggcgccttccgagtgt
ctcgtgcctctagcggaacatgaagattacaaatccctaaagaaagtaatggagcgcgcg
agtgtgactgtaacgaagctaaagcgaagcgagttcaccaccgaaggcctgatgcaagac
ctgaacagactgttaaagttcaagccagaacaacagcaggacgcgaatgcgtttgaagag
acaagaaaggaggtcgcgatgagctgtctagcggcggcgattaaatatgtgtctttgatg
actgacaatactaattttggaagattccgactgaccaccatcaagtcggacatgttccta
catttggacgcggcggcgctgagcgcgctcaacgtgctcccagaactaggagatgcgcct
gcgccttcccggagtctgctgggcttgctggaccactgccggacgcaacaggggaaacgg
ctcctagcccaatggctgcgccaacccctccgcgacataaacctgataaacgagcggctg
gacgtggtgtgcctgctggtgggtaactccgccctgcgcctgcagctgcacgacgaccac
ctgcggcgcctgcccgacctgcgcgcgctcgcacgccgcctcaccaggaggaaggccaac
ctgcacgactgctataggatctatcaggccatcaaacgtctcccggctctcctacattgc
ctgtcggaggccgacgacgcgacagtccattcgtccatcgccgagcccatctcggaatta
aacgaagacctcggcaagttccaagagatgattgagactactgtcgacatggaggctgta
gatagaggagagttcctagtgaacccctcattcgacgagcaactgcaggcgttacgggct
gaactggacaatctccaatcgtcagcggacaaagaactgaacaaggctgcccgcgacctg
ggtctcgatgccggcaaaactatcaagttggaaagcacgcccaacggattttgcttcaga
gtaaccatgaaggaagagcaagcgctccgcaacaacaagaagtacaccatcatagacgcc
gtcaaaggaggagtcaggttcaagaatggcaagctgggcgatctgaccgaggaatacgtg
cacaccaggactaactacgagaaggagcaggacaaggtcgtggctgagatcgtgggtatt
gcttcgggctactccgaatgcctgttctgcctgtcccacgtgctctcgcgcctcgacgtg
ttggtctcgttcgcggtggcagccgtgtcagcgcccgagccgtactgccgtcccgtcgtc
actgaaaacatcgacgagttcgtgctcaaagatctgcgacacccttgcttggaagttcag
gaaggcgtgtcattcattcccaatgatgtagtgtttaaaagagactcgtgcctgatgcac
atagtgaccggcgccaacatgggcggcaagtccacttggatgcgctcgtgcggggcggcc
ttgctgctggcgcacgcgggcagcgcggtgcccgccgccgccgccacggtgccgcggctg
cgggcgctgtgcgcgcgcgtgggcgccgccgacagggagcaacaagggcagagcaccttc
atgctggagatgatcgagtccgctaccatactgaagactgcaacaccggactctctggtg
ctgatcgacgaattgggacgaggcacgtcgacatacgaaggttgcgggattgcttgggct
attgctgaggagctagcaacgaaatgtaaatgcttctgcctcttcgcgacccactaccac
gagttaacccgcctgccaagcctgcatcgcaacgtaattgtgaactcgcacgccgaggcg
tccgtcgtcgaccaacagttgctgttgcttcacaagatcgctccggggccggccacgcac
tcgttagggcttcatgtggctaagttagcggatctaccagactctatcatagagtatgct
gaaactaaacaagcggaactggagaccaacttattcgaggcagccagcatagaggaccgc
gagtcagaggccggacaggccctgatactagaattcttacgacagtgcaaacagcttgaa
gcgtccaacctgtccaatgaagtcttggttaaagaaataggagctttgaagaataactta
ctgaagcaggataataaatatatacaagcgcttatggcgaactga
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