Cydia strobilella (spruce-seed moth): 134745919
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Entry
134745919 CDS
T10503
Name
(RefSeq) DNA repair protein RAD50-like
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cstb Cydia strobilella (spruce-seed moth)
Pathway
cstb03440
Homologous recombination
cstb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cstb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
134745919
03450 Non-homologous end-joining
134745919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cstb03032
]
134745919
03400 DNA repair and recombination proteins [BR:
cstb03400
]
134745919
DNA replication proteins [BR:
cstb03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
134745919
DNA repair and recombination proteins [BR:
cstb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
134745919
BRCA1-C complex
134745919
NHEJ (non-homologous end-joining)
MRX complex
134745919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
AAA_16
AAA_29
ABC_tran
DUF6468
AAA_22
RRP14
Motif
Other DBs
NCBI-GeneID:
134745919
NCBI-ProteinID:
XP_063536100
LinkDB
All DBs
Position
12:4747262..4773908
Genome browser
AA seq
1300 aa
AA seq
DB search
MAGIKSLAVRGIRSFGPEKNDEQRITFQTPLTLILGQNGCGKTTIIECLRYAITGQMPPG
SSDECFVHDAKVNKSTEVLGEVKLEILAPNDEQLEVTRAMRVTALPDRKVKFQALSSTLR
LTNEHGECRDVTLDMDLRMHNALGVSDAILNSVIFCHQEDSTWPLDDGQKVKERFDEIFD
SEKYSECFEHLKKLRKEYSHDIKLLEQEVDHLFEKKEELEKKKLDVENIETLITEANAKI
EEMTKELEEVSAKLETIKTMEKSIVGLEHKRDKIKVKLENFQTQEKELKNTIKSLFEGNV
EELKESIATHDQTVRDKQKELIEIYERKSAFDKEREKIENEMTYNKVKLNEFNFLENQNK
EKVDRRNKLVEEAMVLAEMESKKIQSEEEADKAIKDLQQKVKELNKDLTTTQSQADDEAN
KLQSHVNACRDALSRHNEKISNKELDVETVKKHILKKDNEINDANVSRSRLVEIETKLKA
AEDEHQAAIDELNTEELQKEMTEDEKLIEQNEKELEELNQKVTKLQKQSAKIAERDTIDR
SIKDKQDQLSNLLSKHSATITELLGTLPEENYAVAVNKVEAEWRADVKSSKQKLKEKQKE
LTSLEAERKTVGEMLSEKRAEIVKSDAKIKKACGNQTYDETLKELTSLVEDLQEKQAVLQ
ASTVVIDKYKSLLKDTSCCPLCNRGFNSDHEVTDLISSLGKQVLNVPAELEKVTEELQRT
SAKKDELLALKTVNGKMSSLRDKERDIDTRLEGLDERIKALKTTVEELTAALKEPEQKLQ
NLKQISGDMPLLDRYKTEIAISTKKLEDIRSQCDNGLDTDMTLEEASSRQRDLRHETSTL
RTRVRTSQKKLNAHLRKLQTKADAKSKLKEKTLNIQKKVQGICTLQEAIKQLEEDKDRYN
GELKELQAATEGFKKDLQDKEDAKTDAVKKNRLIIESKRNYIAKVVKAVDRIKTVLSELR
QHEEKKIPLQMKMFNELNDKLSDKRKQILIDESVLGKRRHILRDEIAKQELNQRDLADNL
KLRGIQTDIENCEKEISEIAEKTNGFNMDLLKEKSALATKDKQISKEREQNRGKLSAHKD
RLKQCKQDLQDMIDEGIEKTYKEKYYQLTVTKAVSKDIKDYYMALEKCLLEFHKEKMKNI
NLIVREMWRKIYRGNDIDYIEIKTDGGLMEDTDRYKYNYRVVQCKNGVEIDMRGRCSAGQ
KLLACLIIRLALAETFSTRFGVLALDEPTTNLDQENIKYLCMALNEIVQERMSQKNFMFI
IITHDKEFIDSLGHIDQVSHYYEVSRNGKGKSEVKKVCFS
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atggctggtattaaatctcttgccgtgagaggcatacgaagtttcggtccggagaaaaac
gacgaacaacgcatcacatttcaaacccctttgacgcttatattgggtcaaaatggttgc
ggcaaaaccacgattattgaatgtttacgctatgctatcacagggcaaatgcctccaggt
agcagtgatgagtgttttgtgcatgatgctaaagtaaataaatcgacagaagtcctagga
gaggtcaaactggagatcttagctccaaacgatgaacagctagaagttacccgcgccatg
cgtgtgacagccctgccggaccgcaaggtcaagttccaggccctcagctcgacactgcgg
ctgaccaatgaacatggggagtgtagggatgtcacattggatatggatctacgtatgcat
aatgctcttggtgtctccgatgccatcttgaactccgtcatattctgtcaccaagaagac
tcaacctggccattggatgacggtcagaaagtcaaagagaggttcgatgagatttttgat
tcggagaagtacagcgagtgcttcgaacatttaaaaaagctgaggaaggaatacagccat
gatatcaaattgctcgaacaagaagtagaccatctttttgagaagaaagaagagttagaa
aagaagaagctagacgtagagaacatagaaactctgatcacggaagccaatgccaaaata
gaagagatgactaaggagttagaagaggtgtccgctaagttggaaactattaagactatg
gagaagagcattgtggggcttgagcataagagggataagattaaagtcaagttggagaat
ttccagactcaagaaaaggaattgaagaacaccatcaaatctttgtttgaaggaaatgtt
gaagaattaaaagaaagcattgcaacccacgaccaaacagtaagagacaaacaaaaagag
ttaatagagatttacgaaaggaagtcagccttcgacaaggagcgagagaagatagagaac
gagatgacctacaacaaggttaaactgaacgagtttaacttcctagagaaccagaataaa
gagaaggttgataggaggaataagttggttgaagaggctatggtgttagctgaaatggaa
tcaaagaagatacaatcagaagaagaagcagacaaggccatcaaagatttacaacaaaaa
gtgaaagagctgaacaaggatctgaccactacccaatcccaggctgatgatgaggcgaac
aagttgcagtctcacgttaacgcttgtagagatgctctgtcgcgacacaacgagaaaata
tcaaacaaggagctggacgtagaaacggtcaagaaacacattctgaagaaggacaacgaa
ataaatgacgccaacgtgtcccggtccaggctcgttgagatcgaaaccaagttgaaggcc
gctgaggatgaacatcaggctgccatagatgaattaaacaccgaagagctacagaaggaa
atgactgaagacgagaaattgattgaacaaaatgaaaaagagcttgaagagttgaatcag
aaggtaaccaaactccaaaagcaatccgccaagatagctgaacgcgacaccatagaccgc
tccatcaaagacaagcaagaccagctatccaatcttctgtctaaacacagcgcaaccatc
acagagctgcttggtaccttgccggaggagaattatgctgttgcggtgaataaggttgaa
gcggagtggagagcggatgtgaagagcagcaagcagaagcttaaggaaaaacagaaggag
ttaaccagcctggaagcggaacgcaagacagtaggcgagatgctctcagaaaagcgcgct
gagatcgtcaaatcggacgccaagatcaaaaaggcttgcggcaaccagacgtatgatgag
acccttaaggagctcactagtctagttgaagatttacaggaaaaacaagccgtattgcaa
gcgtcaactgtcgtcatcgataagtacaagagtttgttgaaagacaccagctgttgtccg
ctgtgcaaccgagggtttaactctgaccacgaggtgacagacctcatatcctcgctaggg
aagcaagtcttgaacgttcctgccgaactagagaaggtcacagaagagctacaacgtact
tcggcaaagaaggacgagttacttgcactgaagaccgtcaatgggaagatgtcaagcttg
agagacaaggagagggatatagacacaagactagagggacttgatgagagaatcaaagcc
ctcaaaacaacagttgaagagctcacagcagcgctcaaagagcctgaacagaaactgcaa
aacctcaagcagatatcaggagacatgccgctcctggaccgctacaaaactgagatcgcc
atatctactaagaaattagaggacatccgctctcaatgcgacaacggactagacaccgac
atgactctagaagaagcgagcagccgccagcgcgacctgcgacacgagaccagcacgctc
cggaccagggtccggaccagccagaagaaactcaacgctcatcttcgcaagctgcagacc
aaggctgatgccaagagcaagctgaaggagaaaacactcaatattcaaaaaaaggtccaa
ggcatttgcactctccaagaggcgatcaaacaactagaagaagacaaggaccgatacaat
ggagaactgaaagagttgcaggcagctacggagggcttcaagaaggatttacaagacaag
gaggatgctaaaacagatgctgtcaaaaagaacagattaataatagaatcaaagcggaac
tacatcgctaaagtggtgaaagccgtggacagaatcaagacggtactatccgagttacgc
cagcacgaggaaaagaagatccctctgcagatgaagatgttcaacgagctgaacgacaag
ttgtcagacaagaggaaacagatacttattgacgagagcgtgttggggaagcggaggcat
atcttgagggacgaaattgctaagcaagagctcaaccaacgcgacttggctgacaacctc
aaactgcgcggcatccagacagacatagaaaattgcgagaaagagatctccgagatagcg
gagaagaccaacggtttcaacatggatctgctgaaggaaaagagtgcccttgcaactaag
gacaagcagattagcaaggagagggaacagaatagagggaaattgagcgcgcataaagat
agactgaaacagtgcaagcaagacttacaagacatgatagacgaaggcatagagaagacc
tacaaggagaaatactaccaactcacggtgaccaaggccgtgagcaaagacattaaagat
tactatatggcgctcgagaagtgcttgctagaattccataaggagaaaatgaagaatatc
aaccttattgtaagagaaatgtggaggaagatctacagaggaaacgacatagactatatt
gagataaagactgatggcggcttaatggaagacacggaccggtacaaatataactacaga
gtggtgcagtgcaagaacggcgtggagatcgacatgcgcgggcgctgctcggcgggacag
aagctgctcgcctgtctcatcatccgtctagcgttggcggaaaccttcagcaccagattc
ggcgtcctagcactagacgagccaactacaaacctggaccaggaaaacataaaatacctg
tgcatggcgctcaacgaaatagtccaagagcgaatgagtcagaagaacttcatgtttatc
attatcacgcacgacaaggagtttatcgactcgctaggacatatcgaccaggtgtcccac
tactatgaggtgtcgagaaacggcaagggcaagtctgaggtgaagaaagtgtgcttctct
taa
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integrated database retrieval system
