Cydia strobilella (spruce-seed moth): 134746028
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Entry
134746028 CDS
T10503
Name
(RefSeq) DNA repair protein RAD50-like isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cstb Cydia strobilella (spruce-seed moth)
Pathway
cstb03440
Homologous recombination
cstb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cstb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
134746028
03450 Non-homologous end-joining
134746028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cstb03032
]
134746028
03400 DNA repair and recombination proteins [BR:
cstb03400
]
134746028
DNA replication proteins [BR:
cstb03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
134746028
DNA repair and recombination proteins [BR:
cstb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
134746028
BRCA1-C complex
134746028
NHEJ (non-homologous end-joining)
MRX complex
134746028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_21
Rad50_zn_hook
SbcC_Walker_B
AAA_13
AAA_29
AAA_15
OVT1
ABC_tran
AAA_16
NACHT
Motif
Other DBs
NCBI-GeneID:
134746028
NCBI-ProteinID:
XP_063536306
LinkDB
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Position
12:complement(8052032..8073955)
Genome browser
AA seq
1303 aa
AA seq
DB search
MAGIKSLAVRGIRSFGPDDADEQRISFDKPLTLILGQNGCGKTTIIESIRYAITGQMPPG
SRNECFVHDTKVNRTTEVQGQVKLKIVNANDKQLEVSRSMKVTCMAKKKPVFKTLDSFLS
VIDEQGRVKDISSRCADLDSVMHLELGVSKAILNSVIFCHQEDASWPLEEGKKVKERFDE
IFDADKYSTCFDRLRKIRKEYATSIKLLEQSVAHLTEQKEELDKKKLNVVNDESRISDAE
LKVSKITQELNPITEKLKAIETIQKNLVAFESKREKIKARLEHCQTQEQELKKAIKNIFE
GSITELQENINSYGTTAKAKQKELEESYKKNFSFNKDEEKIANEKTYNEVKFNKLILLES
QNQDRIDRKNNMIVETAKLSEIEIQPIESNEEADAAINTVTNKIKSLQKDLEELKSMADA
EENKLQSLVNASIDALSRHEQKISNKESEIKTVRNNIVKIEREIMDANESKLRLETVEKK
VKTAEEEYESAVRELNTEEGQREINDDEKVIEQHEHELEQLNDKVTKLQKQSAKLKERDL
IEDSLKQKEKQLMLLKNKHRTAITELLGRMPENGFTMAIQKFDLEISEDVESMKKKLKEK
HIEVTSQEAERKHVREMLNDRRSELTKAEDQMYKACGTQSYEATLAKLNSTVEKLQEDHN
LAQSSMYIITKYKGQLKDNNCCPLCNRGFDAESEVTDLISQLTTQAMNVPAKLEKITEEL
QRASAKKDDLLGMRSLNEKIQSLKEKEIPQLEKRLSDVDKNISTISESVEEISMSLMEPE
QKLQTAKQVAGHMPLMDQMITEVNSITKNLEAIKAQCSGLESDLTLDEATAKQTDLRQKI
GTLRARVKNAQVKLNAHAKKLQAKAEAKNKLKEEYLNIQKKVQELHNLQETLKQLQANSE
KYGLELKQLQDATGALKAELKEKENVKTETVKKNRTAIDTKRSFITKILNSFDKVKTIII
EIKQHEEKNVQREMDKIKEANERLMERQKQIMTDRNTLTKRIDSLRDELAKQEIYKRDLD
DNLKLRKAQTEIASCDKELAEINEKMSGVNVDMISEKGPLINKHTQLLREKAVTEGELIE
IKKRLQQNRLELKKAQNKDVEKKYREKFYEMKVTQALDKDIKEYSVALEKCLMEFHREKM
ENINLIIREMWRKIYRGNDIDYIEIKTESSMSADMERRKYDYRVVQSKNNVEIDMRGRCS
AGQKVLACLIIRLALAETFSSRFGILALDEPTTNLDHENVRSLCSALGEIVQERMRQKNF
MFIIITHDKEFIESLGNVDKVTHYYEVSRNDEGKSRVKKIRFS
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaattaaatcgttagctgttcgaggcatacgaagttttggccccgatgatgct
gatgaacaacggatatcattcgataaaccgttgactcttatccttggacaaaatggttgt
ggaaaaactacaatcattgaaagcattcgatatgccatcacgggtcagatgccaccaggc
agccgaaacgaatgttttgtccacgacacgaaagttaacagaacaactgaagttcagggt
caagttaaacttaagatagtaaatgccaatgataaacaactagaagtgtcaagatctatg
aaagttacatgcatggctaaaaagaaaccagtatttaagactttggattcatttctctca
gtcattgatgaacagggcagagtaaaagatatatcatccagatgcgctgacttggattct
gttatgcatctagaacttggtgtctctaaagcaattctaaattcagtaatattctgccac
caagaagatgccagctggcccctggaagagggcaaaaaagtcaaggaaagatttgatgaa
atatttgatgcagataaatacagcacttgctttgatcggttgagaaagatccggaaggag
tatgcaacatctattaagttactagaacaaagtgtagcccacctgactgaacaaaaggag
gaattagataagaagaaattaaatgttgttaatgatgagagccgtatctctgatgcggag
ctaaaagtgtccaaaataactcaagagcttaacccaatcacagaaaaactgaaagcaata
gagacaatacagaagaatttagtagcatttgaatctaagagagaaaaaattaaagcaaga
ttggaacattgccaaacacaagaacaggagctgaagaaagctatcaagaatatttttgaa
ggatcaatcacagagttacaggaaaatataaatagctatggcaccacagccaaagcaaag
caaaaagaactcgaagagtcctacaaaaagaacttctcgttcaataaggatgaggagaag
attgccaatgaaaaaacttacaatgaagtgaagtttaacaagctcattttattggaaagc
caaaaccaggatcggattgatagaaagaacaacatgattgtggaaactgcaaaattgtcg
gaaattgaaatccaaccgatagaatcaaatgaggaagcagacgcagcaattaacacagta
acaaataagatcaaatctctgcagaaagatcttgaggagttgaaatctatggctgatgca
gaagagaacaaacttcagtcactagtcaatgctagtatagatgccctttcccgccatgaa
caaaaaatatcaaataaagaatcagaaattaagactgtaaggaataatattgtcaagatt
gaaagggagataatggacgccaatgaatcaaagttacgattggaaactgtggaaaaaaaa
gtcaaaactgcagaagaagaatatgaatcagcagtacgagaattaaacacagaagaaggc
caaagagaaattaatgatgacgaaaaagttatagagcaacatgaacatgaattagaacaa
ctgaatgataaggtaacaaagcttcaaaaacaaagcgcaaaattaaaagagcgagattta
atcgaagattcgttgaagcaaaaggaaaaacagctgatgcttctaaagaataaacacaga
actgctatcacagaactgttgggacgaatgccggagaatggttttactatggccatacaa
aaatttgatttggaaatatcagaggatgtggaatctatgaaaaagaagttgaaggagaaa
catattgaggtgaccagtcaagaagctgagcgcaagcacgttcgagagatgctaaacgac
cgccgcagcgagttgacaaaagcggaggatcagatgtacaaggcttgtggtacacagtcg
tatgaagcaacacttgctaaattaaatagcaccgtagagaaattgcaggaagatcataat
ttggcgcaatcttcaatgtacatcatcactaaatacaaaggacagctcaaggataataac
tgttgtcctttgtgtaaccgtggatttgatgcggaatctgaagtaaccgacttaatatcc
caactgacaactcaagctatgaatgttccggcgaaattggagaaaattaccgaagagttg
caacgagcctctgccaagaaagatgatctgctcggtatgcgatccctgaacgaaaaaata
cagtcgttaaaagagaaggaaataccacaactggagaaaagacttagtgatgtggacaag
aacatttcaacaatatcggagtctgtcgaagaaatatcaatgtccctgatggaaccggag
cagaaattgcagacagccaagcaggtcgcgggccacatgccgctcatggaccagatgatt
actgaagtcaacagtatcactaaaaacttagaagccataaaagctcaatgcagcggccta
gaatccgatctgacgctggacgaagcgacagcaaagcaaactgacttgagacaaaagata
ggcacccttcgagcgcgagtcaagaatgcgcaggtgaagcttaacgcgcatgccaagaaa
ctgcaagccaaggccgaggccaagaataagttgaaggaggaatatctcaacatacagaaa
aaggttcaagagttacacaatttgcaagaaacgctaaagcaattgcaagcaaacagcgag
aagtatggcctagaactaaagcagctacaagatgccaccggagcgctcaaagcagaactg
aaagagaaggaaaatgtcaagactgagacagttaaaaagaataggaccgcaatcgacact
aagcgaagctttatcactaaaatcttaaactcatttgataaggtgaagaccattataata
gagataaaacagcatgaagagaagaacgttcaacgcgaaatggataaaataaaagaggcg
aatgagcggctgatggaacggcagaagcagattatgacagacaggaatactcttactaaa
agaatagactcattaagggacgaattggccaaacaagagatttacaaacgcgatttagac
gataatctcaaactgaggaaagcccaaacggaaattgctagctgtgataaagaattagcg
gaaatcaatgagaagatgagtggcgtcaatgtggatatgatctccgaaaagggaccttta
attaataaacatacacagttgctaagagaaaaagctgtaactgaaggagaattaattgaa
attaagaaaagacttcaacaaaataggctagaattaaagaaagctcagaataaggacgtc
gagaagaaatacagggaaaagttctatgagatgaaagtgacgcaagcattagacaaagat
atcaaagagtattctgtggctttagaaaagtgtctcatggagttccacagagaaaaaatg
gaaaacatcaatcttatcataagggaaatgtggcggaagatatacagaggaaacgatatt
gactatatagagataaagactgaatcaagcatgtccgctgacatggaaagacgtaaatac
gattatagagttgtacaaagtaagaacaatgttgagatcgatatgagggggcgatgcagt
gctggccaaaaagtattagcctgcctcatcataagattggctctcgcagaaacgtttagt
tctaggttcggcatcctagccctagacgaacctacaacaaatctagaccacgaaaacgtg
cggagcctatgctccgcgctcggcgagatagtccaagagcgcatgagacaaaaaaacttc
atgttcatcatcatcacccacgacaaggagttcatagagtccctcggcaatgtggacaag
gtcacgcattactacgaggtctcgagaaacgatgaggggaaatcacgagtcaaaaagatt
aggttcagttaa
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integrated database retrieval system
