Cydia strobilella (spruce-seed moth): 134746555
Help
Entry
134746555 CDS
T10503
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
cstb Cydia strobilella (spruce-seed moth)
Pathway
cstb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cstb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134746555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cstb03041
]
134746555
Spliceosome [BR:
cstb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
134746555
Complex C
U5 SnRNP specific factors
134746555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_16
TPR_17
TPR_CcmH_CycH
TPR_21
TPR_12
DUF6525
Motif
Other DBs
NCBI-GeneID:
134746555
NCBI-ProteinID:
XP_063537038
LinkDB
All DBs
Position
13:complement(5768814..5782180)
Genome browser
AA seq
929 aa
AA seq
DB search
MSVPPQAFVNKNKKHFLGIPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAPPA
AKRKKNEEEDDDEDLNDSNYDEFSGYSGSLFSKDPYDKDDAEADAIYESIDKRMDEKRKE
YREKRLKEDLERYRQERPKIQQQFSDLKRELKTVSEDEWSAIPEVGDARNRKQRNPRAEK
FTPLPDSVLSRNLGGESSSSIDPNSGLASMMPGVMTPGMLTPSGDLDLRKIGQARNTLMT
VKLSQVSDSVTGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAW
IASARLEEVTGKVQSARNLIMKGCEVNPSSEELWLEAARLQPIDTARAVIAHAARNLPHS
VRIWVKAADLEQEPKAKRRVYRKALEHIPNSVRLWKAAVELENPEDARILLSRAVECCPT
SVELWLALARLETYENARKVLNKARENIPTDRQIWVTAAKLEEAHGNTHMVEKIVDRAIT
SLSSNGVEINREHWFKEAMEAEKSGAVHTCQAIIRSVIGQGIEQEDQKHTWMEDAEACAN
EGAYECARAVYGYALSVFPSKKSIWLRAAYLEKQHGSRASLETLLQRAVAHCPKSEVLWL
MGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENKEYDRARRLLAKARASA
PTPRVMIKSAKLEWALNNLEVSLKLLEEAIKVFADYAKLHMMKGQIEEQMGKDEDAHNTY
TQGLKKCATSVPMWILLSRLEEKLKHITKARSVLEKARLRNPKNADLWLESVRLERRNGS
AEISNAVMAKALQECPTAGRLWADAIFMESRPQRKTKSVDALKKCEHDAYVLLAVSQLFW
TERKLNKCREWFNRTVKIDADFGDAWAFFYKFELLHGNEQQQEEVKARCKTAEPRHGEYW
CKHAKDIQNWCFSTEQILLLVAKSLPVPT
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgccaccgcaagcgtttgttaataaaaacaagaagcattttctcggaatccca
gcacctttaggttatgttgctggtgttggcagaggagcgactggtttcactactcgatct
gatatcggtcccgctcgagatgccaacgacgtatccgacgaccgacatgcgccacctgct
gcgaaacgcaagaaaaacgaggaagaagatgatgatgaagacttgaatgattctaactat
gatgagttctcgggttacagtggatcactgttctcaaaggatccatatgacaaagatgat
gcagaggctgatgccatttatgagtccattgacaagagaatggatgagaagcgaaaagag
tacagagaaaaacgactcaaagaagacttggaaagatatcgtcaagaaagaccgaaaata
caacagcaattttctgacctaaagcgagaattgaaaacggtatcggaggacgaatggtct
gcaattcctgaagtgggtgatgcgcgtaacagaaaacaacgtaaccctcgcgctgagaag
tttaccccattgccggacagtgtactgtccagaaacttgggaggagagtcctcttcatcc
attgaccctaattcaggcttggcttctatgatgcctggtgttatgactccggggatgttg
actccgtctggtgacctggacttacgtaagatcggtcaagcgagaaacacccttatgaca
gtgaaactgtcccaggtttctgactcggtcaccggtcaaactgtagtcgatcccaaaggt
tatcttacggatctccagtccatgatacccacatatggaggggacattaatgacataaag
aaagctaggttgctcctaaagtctgtgcgtgagacgaatccgaaccacccgcccgcttgg
attgctagtgctcgattagaagaagttactggcaaagtacagtcagcccgtaacctcatc
atgaagggttgcgaagtgaacccaagcagtgaagagctttggctggaagcggccagatta
cagcccatagacactgctcgcgctgtcatagcacatgctgctaggaatctaccgcacagt
gtgaggatctgggtgaaggctgcagatttggagcaggagcctaaagctaaacgacgagtc
taccgcaaggctctcgagcatatacccaactcagtccgtctttggaaggccgcagtcgaa
cttgaaaacccggaagacgcccgcatcctcctctctcgcgccgtggaatgttgtcctacc
agtgtagagctgtggctggccttagcaaggctcgagacgtatgaaaacgcgaggaaagtc
ttgaataaggctagagagaatattccgacggataggcagatttgggtgactgctgcgaag
cttgaagaggcccatggcaacacacacatggtagaaaagatcgtagaccgagcgatcaca
tcgctaagctctaacggagtggaaatcaatcgcgagcactggttcaaagaagcaatggag
gcagaaaaatccggcgcggttcatacttgccaggcgatcatcagatctgttattggacaa
ggtattgaacaagaagatcaaaaacacacttggatggaggatgcggaagcatgcgcaaac
gaaggcgcatacgaatgcgcccgcgcagtctacggctacgcgctctcagtgttcccttca
aagaagtctatctggttacgcgccgcgtacttagagaaacaacatggctcccgcgccagt
ctagaaactttgttgcaaagggctgttgcacattgtcctaaatctgaggtgctgtggctt
atgggggccaaatctaaatggctggctggtgatgtcccagcggctcgcggtatcctgtcc
ctagctttccaggccaatccgaactcggaggaaatttggctcgctgctgtgaaactcgag
agcgagaacaaagaatacgacagagcgagacggctgctggctaaagctcgagcatcggca
ccgacacctagggtaatgataaagtccgccaaactggaatgggcgctcaacaatctagaa
gtctccttgaaactcctagaggaagccatcaaagtgtttgccgactacgcgaagctacac
atgatgaaagggcagatagaggagcagatgggcaaggatgaggacgcgcataacacttat
acacaggggttgaagaaatgtgctaccagcgttcccatgtggatattactgtcgcggctg
gaggagaaattaaaacacatcacgaaagccagatcggttctcgagaaggctagacttagg
aatccaaagaatgctgatctatggttagaaagtgtgcgtctagaaaggcggaacggcagc
gcggagatatctaacgccgtaatggccaaagctctgcaggaatgtccgaccgcgggccgc
ctgtgggccgacgccatcttcatggagtcacgcccgcagaggaagaccaagagcgtggac
gcccttaaaaaatgcgagcacgacgcctacgtattgctggctgtttcgcaactcttctgg
actgagaggaagctgaacaagtgcagagagtggttcaaccgcacggtaaagatcgacgcc
gacttcggcgacgcttgggcattcttctacaagttcgaattactccacggcaacgaacaa
cagcaagaggaagtgaaagctcgctgtaagaccgccgaaccgcgccacggcgagtactgg
tgcaagcacgcgaaagacattcagaactggtgttttagcactgaacagattttattgtta
gtggctaagagcttgcccgttcctacgtga
DBGET
integrated database retrieval system
