Cydia strobilella (spruce-seed moth): 134746629
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Entry
134746629 CDS
T10503
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cstb Cydia strobilella (spruce-seed moth)
Pathway
cstb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cstb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134746629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cstb03019
]
134746629
03012 Translation factors [BR:
cstb03012
]
134746629
Enzymes [BR:
cstb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134746629
Messenger RNA biogenesis [BR:
cstb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
134746629
Translation factors [BR:
cstb03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
134746629
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
HA2_N
DEAD
OB_NTP_bind
HA2_C
nSTAND3
Cas3-like_C_2
ResIII
AAA_22
AAA_19
NACHT
ATPase_2
AAA_11
NB-ARC
NPHP3_N
ATPase
ABC_tran
AAA_14
PhoH
Motif
Other DBs
NCBI-GeneID:
134746629
NCBI-ProteinID:
XP_063537136
LinkDB
All DBs
Position
13:7246588..7265336
Genome browser
AA seq
1200 aa
AA seq
DB search
MGKKTKQMRLEAKIKKVKNKLKKVKGQGSRGRYFNLFNSKNEEGDPQEHDLPTGGTRNSN
KKKSNKNKTMPHVVLDIPLVVIAQVVSDIKEIENLAEKETIPLNSSQSFQKKILDKPEKQ
ESPPSGWMLGGLKRTPVKTSDFIPIETKRQKNSKQKESNWPVRSQITVETKVKPTPVESI
DFISFKSETKCKSRSESPLPKQTDTKPPPAKCSDFISFKTGGTVEVPIIKIDNNGESANE
LSPSTSKCTSIDINTNFIKIKAGLSGETTKTMLPKFENEDIKTDVISVETESDEVKCLPS
RQLLLRGGEHYKYGYKDIITGTFEEKLDESLAKSASICTKTKGNDCLSIALHEEFQDMIT
RPQFKEIMVFRERLPTFKRSAELLDVINNNQVVVISGETGCGKSTQVPQIILDNALCQNQ
GAYIHILVTQPRRIAASSLASRVAQERAEKLGNSVGYAVRLEKSDCRPRGSIKYVTTGIL
LADLEVNQGLTNFSHIILDEAHERNSHLDFSMCMLKPVLKKRRDLKLILMSATIDSCRLR
TYFGNCPVIHIEGLAYPVKDFYMEDVLTMTGYTLPPVQHGSNEKDKNGNQKKSSLTKEEK
DMNYKAEIDPWLRSFNGRLNKDVYTTLQDRRIEKLNFDLIIDLLVHISRSPPGAVLVFLP
GISDIFKLLRMMNESEMFPQSNYHIYPLHSKLTTIDQHKIFKRPPQHIRKIIIATNIAET
SITIDDIVYVVDCGRVKLKGMDVERNISTLDTEFESKANLMQRRGRAGRCQPGIAYHLIT
SYRSKNIPDRLLPELQRCNLLEPVLEIKKLRLGNALDALKLVPDPPANITVENAVRHLQK
LGALDDEERLTPLGWHLARLPVHPAAGKLLLFGALFGCLDRAASVAAVWGFKDPFNLVIG
KEHEVNQAKRKLALGEPSDHVAISEAIIQWEQLARENQSRFAFEHFLSENTLKLLSQMKG
QLCGNLRQMGFLASKNVRVSWENRNADNLYIFKAIVAAALYPNIAIVRWTNQQNPRKQTR
LNVLTPEDGIVQLHPSSMMLVPQRGPMVPLCNKPGANWLVYWMKQKSSELFLFEVTLVFT
LPLLLFGELAVSEVENSSEECYLSASTVKVRCLKGTADVIFRLRTLLDQVLASMVKETSD
RSTRYSEFDNLVFKAVIDLMTLEDERPEGLEDEFSDSDSSDCEIVCDLKPEDRYPIIVID
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggggaagaaaactaagcaaatgaggctagaagcgaagatcaaaaaagtaaagaataaa
ctcaaaaaagttaaggggcaaggaagcaggggaagatattttaacttatttaattcaaaa
aatgaagaaggtgaccctcaagaacatgatttaccaactggtggaacacgaaattcaaac
aaaaagaagtctaacaaaaataaaactatgccacacgtagtactggatataccattggtt
gttatagcccaagtagtctcagacataaaagaaattgaaaatctggctgaaaaagagaca
atacctttaaattcatcacagtcttttcaaaagaaaatcctagataagcctgaaaaacaa
gagtctccaccaagtggctggatgttgggtggattaaagcgcacaccggtgaaaacttct
gatttcataccgatagaaactaaacgtcaaaaaaattcaaaacaaaaagaatctaattgg
cctgtcaggtcacaaataacagttgagacaaaagtaaaacctacaccagtagaaagtatt
gactttatatcatttaaatctgaaacaaaatgcaaaagccgttctgaatccccactgcct
aagcagactgatacaaagcctccaccagcgaaatgttctgattttatttcttttaaaact
ggaggcaccgttgaggttccaatcataaaaattgataacaatggggaatctgcgaatgaa
cttagcccttccacatcaaaatgtacaagtattgatatcaatacaaattttattaaaata
aaagctggtctatctggcgaaacaacaaaaacaatgttacccaaatttgaaaatgaagat
atcaaaacagatgtcatttcagttgaaactgaatcagatgaagtgaaatgtcttccaagt
agacaactactcttaagaggtggtgaacattacaaatatggatataaagacattataaca
gggacatttgaagagaaattagatgaaagccttgctaaaagtgcatctatttgtacaaaa
acaaaaggaaatgattgcttgagtattgctttacacgaggaatttcaggatatgattaca
agaccacaatttaaagagattatggtgttccgtgagcgactacccacatttaagaggtct
gcagaacttctagatgttatcaataataatcaggtggttgtaataagtggtgagacaggt
tgtggcaaatcaacacaggtgccacagattatcctagacaatgccctatgccaaaatcaa
ggtgcctatatacacatattagtgactcagcctagaagaatagctgcttcctcattggcc
agcagggttgcccaggaaagggctgagaaattgggcaattctgttggatatgccgtgcga
ttagagaaatcagattgcagacctcgtgggagcatcaagtacgtgactactggcatactc
ctggctgacttggaagtaaatcagggtttaactaacttcagccatatcatattggatgag
gctcacgagaggaatagccatttggacttttctatgtgcatgttgaaaccggtacttaaa
aaacgtcgcgacttaaaacttattctgatgagtgcaacgatcgacagttgccgcttacgc
acttactttggcaattgtcccgtcattcacattgaaggcctggcatacccagtaaaagat
ttttacatggaggatgttttgaccatgacgggatacacactgccgccagtccagcatggt
agcaacgaaaaagacaagaatgggaatcaaaagaaatcaagcctaactaaggaggaaaaa
gatatgaattataaagctgaaatcgatccctggctgcgaagcttcaacggtagattgaat
aaagatgtatataccacactccaagatcgaagaatcgaaaaattaaacttcgatttaatt
atcgaccttctagtccatatatctaggagtccgccaggtgccgtgctagtatttttaccc
ggcatcagcgatatattcaaattattgcgaatgatgaacgaaagtgagatgtttcctcaa
tcaaactatcacatttacccattgcattcgaaattgactacaatagaccagcataagata
ttcaagaggccaccacagcacatcaggaaaataataatagctacgaatatagcagaaacg
tctataactatagatgatatagtgtatgttgtagactgtggcagagtaaaattgaaaggg
atggatgtggaacgcaacatttcgacactagatactgaatttgaatccaaagcaaattta
atgcaaagacgtggccgtgcaggtcgttgtcagccaggcatcgcatatcacttgattaca
tcataccgctcaaaaaacatcccagaccgtctcttaccagaactacagcgatgcaacttg
ctcgagccggtattggagatcaagaaactgcgcctgggcaatgcgctagacgcgttgaaa
ttagtaccggatccgccagcgaacattaccgtggaaaatgctgtgagacacttgcaaaag
ttaggtgctctagatgatgaagagcgacttactcctctgggctggcacctcgcgcggctg
ccggtgcacccagcggccggcaaactgcttttattcggcgcactctttggttgtctcgac
cgcgccgcctccgtcgctgccgtctggggcttcaaagaccccttcaatctagttattggc
aaggaacacgaagtaaaccaagcaaagcgcaagttggctttaggagaacctagcgaccat
gttgctatatcagaggctattatacaatgggaacagttagctcgtgaaaatcagagtcgg
ttcgcttttgaacatttcctctcggagaacacactgaaactgctatcgcagatgaaaggc
cagctgtgtggtaatctgcgtcaaatggggttcttggcatcgaagaatgttcgcgtatcg
tgggagaatcgaaatgcagacaatctgtatatttttaaagcgattgtagctgcggcgctg
tatcctaatattgctattgttagatggacaaaccagcagaacccgcgtaaacaaaccaga
ctcaacgtattaacaccagaagatgggatagtccaattgcatccaagcagtatgatgctc
gttccacaacgagggcccatggtaccgctgtgtaacaagcccggggcaaattggttggtg
tattggatgaaacaaaaatcttcagaattgttcctcttcgaagtcacgttggtgttcact
ttacctttgttgttgtttggagagttggcggttagcgaagtggaaaattcgtccgaagaa
tgctacttgtcagcatcgacggtgaaagtccgctgtctaaagggaacagcggacgtcatc
ttccggctgaggaccttgctggaccaggtcctggcctccatggtgaaggagaccagcgat
cggtctacgcgttatagtgaatttgataatttagtttttaaggctgtgatagatctcatg
acattagaagatgagagaccagagggcttggaggatgaattctcagattccgatagctct
gattgtgaaattgtatgcgacctgaagcctgaagatcgttaccctattattgttattgat
taa
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