Cydia strobilella (spruce-seed moth): 134746631
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Entry
134746631 CDS
T10503
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cstb Cydia strobilella (spruce-seed moth)
Pathway
cstb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cstb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134746631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cstb03019
]
134746631
03012 Translation factors [BR:
cstb03012
]
134746631
Enzymes [BR:
cstb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134746631
Messenger RNA biogenesis [BR:
cstb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
134746631
Translation factors [BR:
cstb03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
134746631
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
HA2_N
DEAD
OB_NTP_bind
HA2_C
nSTAND3
AAA_19
NPHP3_N
AAA_22
NB-ARC
Cas3-like_C_2
NACHT
AAA_14
ABC_tran
AAA_11
nSTAND1
AAA_16
AAA_23
Motif
Other DBs
NCBI-GeneID:
134746631
NCBI-ProteinID:
XP_063537142
LinkDB
All DBs
Position
13:7265955..7279188
Genome browser
AA seq
1073 aa
AA seq
DB search
MSNHWQQGRKNKSWGNFKKTNTHPPHLKGKAIGLFYRDQAAKRNDEKKERREIHMALNIP
SAVMYKLASDIQAIEQLAQKHNITLRKSEMYIKDEPMSDSSFESEKIAIKCEDSVKCEND
SQDFLISQAGPSSSKESTSEGIFKAPKTPGVKHPPAECSDFIAVKTESTEDYESSLERTL
HLRDQSHYKYGYQDIITGTFDEKLDENLAKGINICAKTQENDNLSVAMHEEYKDMVTRNQ
FKSMMGFRGKLPTFKKSAELLDLVNNNQVVVISGETGCGKSTQVPQIILDDAIRKNQGAY
IHILVTQPRRIAASSLASRVAQERAESLGNSVGYAVRLEKTDARPRGSIMYVTTGILLAD
LEVNQGLANYSHIILDEAHERDCHMDFSMCMLKLVLKKRHDLKLILMSATIDSERLSAYF
DDCPTMHIEGLAYPVQPLYLEDVLALTRYQLPADNKRNSGPPKRGRGGQWNQMKVERNQM
ERDVQYRAEISPWLERIKSKIDRNVYVSLQDSRIEDLNIDLIIALLSHITKGPPGAVLVF
LPGIGDISKLVKLMNDSGMFPSSMFEIYPLHSKLPTLDQHKIFVRPPQNIRKIIIATNIA
ETSITIDDIVYVVDCGRIKMTGLNVETNVSTLNTDFESKANLMQRRGRAGRCQPGIAYHL
LTSYRAQSIPDRLLPELQRSNLLEPVLQVKKLRLGNAQDAFKLVPGPPAEVTVDKAVRHL
QQLGALDGEERLTPLGWHLARLPVHPAAGKLLLFGALFGCVDRAASVAAVWGFKDPFTMV
IGKQQEVDDAKRSLALGEPSDHIAISEAIIQWERLDRRGKSEFAYDYFLSYNTLQLLSEM
KQQLCENLRQMGFMAASNVRGAWENRNKDNLCVFKAIMAAALYPNIGMVRWTNSRNPCKQ
QKIRVSTPEDGKIQIHPSSVMSSNFKAHVGPLCDKPGANWLVYWLKQKSSALFLFDVTLV
YTLPLLFFGELVVTKVEDSPNECYMSVSSVKVRCQKETADVLFKLRSMLDQVLASMVTES
SERSTRHSQFDELVFKAVIDVMTAEDERSEYMDYESDSGSDSSYHNRRYNHYY
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaccattggcaacaagggcgaaaaaacaaatcttggggaaactttaaaaaaacg
aatacacatccacctcatttaaaaggcaaagcaattggattattctacagagatcaggcg
gcgaaaaggaatgatgaaaagaaggaacgcagggaaattcatatggccctgaatatacca
tcagctgtcatgtataaattagcctcagacatacaagctatagagcaactggctcaaaaa
cacaacataaccttaaggaaatctgaaatgtatataaaagatgaaccaatgtctgacagc
agttttgagtccgagaaaatagcaattaagtgtgaggatagtgtaaaatgtgaaaatgat
agtcaggactttctcatctctcaagctggaccttcttcatcaaaagaaagtacttcagaa
ggtatttttaaagctcccaaaacacctggtgtaaaacatcctccagcagaatgttcagat
tttatcgcagtgaaaactgaatcaactgaagattatgaaagttctttggagagaactctg
cacttgagagatcaatcacattataaatatggataccaggacataataacaggcacattt
gatgaaaagttagatgaaaaccttgctaaaggcatcaatatttgtgctaagacacaagaa
aatgataacttaagtgttgctatgcatgaagaatataaggacatggttacaagaaaccag
ttcaaatcaatgatgggttttcgtggaaaactaccaacatttaagaagtcggcagaactg
ctagatcttgtcaataacaaccaggtggttgtgataagtggtgaaactggttgtggaaag
tctacacaggtgccacagataattttggacgatgccatacgcaaaaaccagggtgcctac
attcacatactagtgacacagcctagaagaatagctgcttcctcattagctagcagagtt
gcccaggagagagctgaaagtctgggcaattctgttggatatgctgtgcgattagaaaaa
acagatgccagaccgcgtgggagcatcatgtatgtgactactggtatcctcctggccgac
ttagaagtgaatcagggcttagccaactacagccatattatactggacgaggcccatgag
agggattgccatatggacttctctatgtgcatgttgaaactggtactcaaaaaacgccac
gacctaaagctcattttaatgagcgcaaccatcgacagcgagcgactgtccgcctacttt
gacgactgtccaaccatgcacatcgagggtctcgcgtaccccgtacaaccactgtacttg
gaggacgttctggcccttacgcggtaccagttacccgcagataacaagaggaactcggga
cctccaaagcggggtcgaggtggacaatggaaccagatgaaagttgagaggaatcagatg
gagagagatgtgcagtatagagctgaaattagtccttggctggagcgtataaagagcaaa
atagacagaaacgtatacgtctcactccaagactcaagaatcgaagatctaaacatcgat
ttaattatagctcttctaagccacataactaaaggcccacctggcgctgtactagtattt
cttcctggcatcggtgatatatccaagcttgtaaaattgatgaatgatagtggaatgttc
cctagttcaatgttcgagatatatccgttacactcgaaactgcccacattagaccagcat
aagatattcgtaaggccacctcagaatataaggaagataataatagctacgaacatagcg
gaaacgtctataactatagatgatattgtgtatgtcgtggactgcggcagaattaagatg
actgggctgaatgtggaaacaaatgtctcgacgcttaacacggactttgaatccaaagct
aacttgatgcaaagacgcggccgcgccggccgttgccagccaggcatcgcctaccacctc
ctaacctcgtaccgcgcacaatccatccccgacagactgctgccagagttacagcgcagc
aacttgctggaaccagtactgcaggtcaagaaattgcgtttgggaaacgcgcaggacgcg
ttcaaacttgtgcccggcccgcccgccgaggtcactgtggataaagctgtcaggcatttg
caacagctaggcgccctagacggagaggaacgcctgacccctctagggtggcacttggcc
cggctgcccgtgcacccggcggccggcaagctgctgctgttcggcgcgctgttcggctgc
gtcgaccgcgccgcctccgtcgccgccgtgtggggcttcaaggaccccttcaccatggtc
atcggcaagcagcaagaagtagacgacgcaaagcgcagccttgccctaggcgagccgagc
gaccacatcgccatatccgaggctatcatacaatgggaacgcctagaccgtagagggaaa
agcgagttcgcttacgactatttcctatcctacaacacattgcaactgttgtcagaaatg
aaacaacagctatgtgaaaacctgaggcaaatggggttcatggctgcgagcaatgttcgt
ggcgcgtgggagaatcggaataaggataatctgtgcgttttcaaggcgattatggctgcg
gcgctatatccgaatattggcatggttagatggacaaactctcgaaacccctgcaaacaa
caaaaaattagagtctcaacgccggaagacgggaaaatccaaatacacccgagcagcgtt
atgagttccaatttcaaagctcatgtaggtcctctatgcgacaagcccggcgccaactgg
ctggtgtattggctgaagcagaagtcatccgctttgttcctgtttgatgtcacgctggtg
tacactctgcctttgttattctttggggagctggttgtgaccaaagttgaagactccccc
aacgagtgctacatgtcagtatcgagtgtgaaggtccgctgccagaaagaaacagcagat
gtgctcttcaagctgcggtccatgttggaccaggtattggcctccatggtgacggagtcc
agtgagaggtcgacgaggcacagtcaatttgacgaattagttttcaaggctgtgatagat
gtgatgactgcggaagacgagagatcggaatacatggactatgagtcagactctggatct
gatagcagttaccataatagacgttacaaccattactattag
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integrated database retrieval system
