Cydia strobilella (spruce-seed moth): 134747014
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Entry
134747014 CDS
T10503
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cstb Cydia strobilella (spruce-seed moth)
Pathway
cstb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cstb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134747014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cstb03021
]
134747014
03019 Messenger RNA biogenesis [BR:
cstb03019
]
134747014
Transcription machinery [BR:
cstb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134747014
Messenger RNA biogenesis [BR:
cstb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
134747014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_helical
zf_PCFS4
Pcf11_C
Pfc11_Clp1_ID
zf_UBZ
HEAT_MROH2B_C
Motif
Other DBs
NCBI-GeneID:
134747014
NCBI-ProteinID:
XP_063537614
LinkDB
All DBs
Position
14:complement(1477347..1505752)
Genome browser
AA seq
1687 aa
AA seq
DB search
MSKEIADEYASSLADLTVNSKPLINMLTILAEENVDHAGVIVDTVEKHLEKVQADIKLPV
LYLVDSIIKNVGGAYVQKFSQIIVNMFTRTFKQVDEKVRSQMFKLRETWHDVFPATKLYQ
LDVKVNLIDPAWPIQAQPHQSTIHVNPNFLKKPPASATTSTPSPEEEEKMKLILAKKEKE
LLMLQQKKIEIELEKTRRALEIAAATNTKMPVIPTVVPNMPVALVNPVMAPVPEAPPVSI
KQRLGPPVSKAPSGARIAPVSAALASARRDPRLARRQPPPPVAVSVPTPAPVMLPTSVVP
TPAPIAPNVFDIKPLERAVTKRKNVITIDVRPDAARRDPRLDKRLERREKQQRLEARREE
ELRRRAAREARRERKNEVKPVEEEKIEEKYPEMDIDKLQIADAKKISKLPPIPKIKREGK
DEKREKNAARLEKKKKRENSESSKESSTSSSPEKKPKHKKEKKEKPVPEEQEVVAFKELK
NYHPERYRNRARSPSPAPASAPAPVEPRDTNEAAESKDVDLRVLPTVEVEKAAPIAQKRS
STELLEGKPKKNKIDKFDRLFGNEDVDLRQLPQVEETAASPKADSGVFTQDSPHVSPKKD
WNEVKEREETKKTPSKLDLVRAKLAEATKGKDRLGRPFLFSKSPSVEKERRRTISSEDVD
LRLENPEEFDCEDHKKTISIIMNQAKEQFSDGKLDKNQYNTLMFQVLQLNEKLKLKEAKQ
RESLEISKRKLHAHVENNKVPSPKSSPKGNNFGDIDERVIPGPFPEPDGPPEMNFMQDSD
MRMMEGHSKGLLPRPPMMPMFAGPGPQPVWRGPFRPRVDEFARRPRGVVPPFFRGKFDKR
APRASFDPRLPFPAPQMQLPTPQMGNFQGECPLEPYDRSGTPPPLGAPGVIIPPTNIQAL
EYVDQDPVKTIQIDGIPREIRFYGETAVIMMDWDDPREIKFLPGSRRVTFDNKDSIVLNF
NEDYKQVEIDDQVFNIRFGAPTRELFVNGRWHECFFGGAPLGAIIDGKPRLIHLEGPLPQ
VDIGKLKRTDLVGGKINLIVDATQMCPVFLDAKVQKFSINNQFFTIRFVDAFRTVLINEQ
PFQVEFGGLPRPIFIGNEKHFIRFSVLPRHVRPGHNPPPGMQGAEVAPNEAVVPTRVEKM
ETDPEPPRPNKTPSPENEMSNQGGLDMLASLMPSSMAPASASDYTSAEPLFPPNPTRPNN
IPGLEAPPTEQKPAFPILGNIGDLFAKLVATGIIKTQEAKEETKEREEPRVEEKVKPREN
RHVIHRVDLSRPETLRQKQPALVSKLYGGMQCSGCGARFPPEHTVRYSQHLDWHFRQNRR
ERDSARRAHSRHWHYDLADWVQYEELEDLEEREKSWFETGDAPAGAEPPAAETETPSVAA
GAPARAACALCGDAFLQFYNEDQEEWHLRNSVRHDDNNYHPLCLEDYKASLTKDEPPKEE
TPQEEKMEEAIEIKDVDETIDNSDNESVVEVVDNDKPVEIDDLDDTSEPAPEPPKEESPE
EILEDGDEDDVVFKAEPVPEVVVEDYDTDDETHAERKQRDEQAKIDYENIRIKQEPVDPD
DEPIITAEEEAVLAAPDTSRAATLAAIDGNAEPRAPTAPPPAPIRINISAPAHKPSAAGP
GPGTAPAPTSTATPPRAEPEESDDEPPPPGEEPELSFTVKPELQGVAFSRQPPVHKGSEL
SGLCSIM
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaggaaatcgcggacgagtacgcgtcgagccttgcggacctgactgtgaacagc
aagccgctgatcaacatgctgactatcctggccgaggagaacgtcgaccacgcgggggtt
atcgttgataccgtggagaagcacttggagaaggtccaagcggacatcaagctgcctgtg
ctctatttagtagattccatcatcaagaatgttggcggcgcctacgtgcagaagttctct
cagatcattgttaacatgttcactaggacattcaagcaggtggatgagaaagtcagatca
cagatgttcaagctgcgtgaaacgtggcatgacgtcttcccggccaccaaactataccag
cttgatgttaaagtgaatctgatcgatccggcttggccgatacaagcacagccccatcag
tctaccatccatgtaaatcccaattttctgaaaaagccccctgcttccgctaccacaagc
accccctcacccgaagaggaggaaaagatgaagctgatcctcgccaagaaggagaaggaa
ctgctcatgttgcagcagaagaagattgagattgagctggagaagacaaggcgggctctg
gagattgcagcagctactaatactaagatgccagtaatcccgacggtggtacccaacatg
cccgtggcgctcgtaaaccccgtgatggcgcccgtccccgaggctccgccggtctccatc
aagcagcgcttgggcccgcccgtcagcaaggcgccctccggcgctcgcatcgcacccgtc
agcgccgcgctcgcctccgcgcgccgcgacccccgtctcgcgcgacgacaaccaccaccc
cctgtggctgtgtcagtacccacacccgccccggtcatgctaccgacctcagtggtaccg
acccccgctcccatagcgccaaacgtgttcgacatcaaacccctcgagcgcgctgtcact
aaacgtaagaacgtcatcactatagatgtgcgtccagacgcggcgcgccgcgatccgcgt
ctcgataaaagattagagagacgcgagaaacagcagagactcgaggcgcgccgcgaggag
gaactcagacgccgcgccgcacgcgaagctcgccgcgaacgcaaaaacgaagtcaaaccc
gtcgaggaagagaaaatagaagaaaaatacccagaaatggacatagacaaactccaaatc
gccgacgcgaaaaagatcagcaaactaccgccgatccccaaaatcaaaagggagggcaaa
gatgagaagcgagagaaaaacgcggcgcgtctcgagaaaaagaaaaagcgggaaaatagc
gaaagcagcaaagagagctcgaccagctcttcgccggaaaagaaacctaaacataagaag
gagaaaaaggagaaaccggtaccagaggagcaggaagttgtggcgttcaaggaactgaag
aattatcatccggagcggtaccgcaaccgggcgcgctcgccaagccccgcgcccgcctcc
gcccccgccccggtcgagccccgcgacacaaatgaggcggcggagagcaaagacgtggac
ctccgagtgttgccgactgtcgaggttgagaaggcggcgcccatcgcacagaaacggtcg
tcgacggagctgcttgagggcaaaccgaagaagaacaagattgataagtttgacagacta
ttcggcaacgaagacgtggacctccgccaactgccccaagtggaagaaactgccgcttcc
cccaaagcggacagcggagtgttcacccaagactccccacacgtgtcccctaagaaagac
tggaacgaggtcaaggagagagaggagacaaagaaaaccccttcgaagttggatctggtc
agggcgaagttggcagaagcgactaaaggaaaagataggctgggaagaccgttcctgttc
agcaaatctccaagtgtggaaaaagaacggcggcgaactatcagctcagaagacgtagac
ttacggctcgagaacccagaggaatttgactgtgaagaccacaagaaaaccatttccatc
atcatgaaccaagccaaggaacagttcagcgatggcaaactagacaagaatcagtataac
acgctcatgttccaagttttacagctaaatgaaaaactcaagcttaaagaggcgaaacag
agagaatccctagagatttccaagagaaaacttcacgctcatgtagaaaataataaggtg
ccaagtccgaaatcgtctccgaaaggaaataacttcggggatatagatgaaagagtcata
ccaggtccattcccggagccagatggaccgccggaaatgaacttcatgcaggactctgat
atgagaatgatggagggacattcgaagggtcttctcccccggccgcccatgatgcccatg
ttcgcggggccgggccctcaacccgtctggcgtgggcctttcagaccaagagtagatgag
ttcgcgaggagacctagaggtgtggttccaccgtttttcagagggaagttcgataagcga
gcgccgcgagcttcattcgatcctcgcctgcctttcccggctcctcagatgcaacttccg
acgcctcaaatgggcaacttccagggcgaatgtcctttagaaccttatgatcgatcagga
actccaccacctcttggcgctccgggcgtcatcatcccaccgaccaacattcaagcgttg
gaatacgtcgaccaagacccagtgaagactattcaaatcgatggaatccctagagagata
agattttatggagagactgctgttatcatgatggattgggacgatccgcgagaaatcaag
ttccttcctggcagcaggcgggtcacgttcgacaacaaagattctattgtcctaaacttc
aacgaagattacaagcaggtcgagatcgatgatcaagtgtttaacatcagatttggagct
ccgacacgggaattattcgtcaatggaagatggcatgagtgtttcttcggcggcgcgccg
cttggagccataatcgacggaaaacctagattaatccatctcgagggcccactacctcaa
gtagatataggaaaattgaagcgtacagaccttgtaggaggaaaaataaacctaatagta
gacgctacgcagatgtgccccgtattcttggacgctaaagtccaaaagttcagtattaac
aaccaattcttcactatacgcttcgtggacgctttcagaacagttttgatcaatgagcag
cctttccaagtcgagttcggaggcctaccgaggcctatatttatagggaacgagaagcat
ttcatcaggttctccgtattacctcgtcatgtaaggccggggcataaccccccgcctggg
atgcagggggcggaagtggcgcccaatgaagcggttgtgccgaccagggttgagaagatg
gagacggatccggaaccgccgaggcccaataagacgccgagcccggagaatgaaatgtct
aaccaaggtggcctcgacatgctcgccagcctcatgccgtccagcatggcgccggcctcg
gcctccgactacacctccgccgagcccctcttccctcccaacccgacccggcccaacaac
atcccaggcctcgaagcaccccccaccgaacagaaacccgctttccccatacttgggaat
ataggcgatctattcgctaagctggtggctacgggtattatcaagacacaggaagctaaa
gaggagacgaaggagagagaagaaccgagggttgaagagaaagttaagcctagggaaaat
agacatgtgattcatcgggtggatttgagcagaccggagactttgagacaaaagcaacca
gccctcgtatcgaagctgtacggcggcatgcagtgcagcggctgcggcgctcgcttcccg
cccgagcacaccgtgcgctactcgcagcatctcgactggcacttcaggcagaacaggaga
gaacgcgactcggcaaggagagcacattccaggcactggcattacgatctggcagactgg
gtgcagtacgaggaacttgaagatctagaggaaagagagaagagttggttcgagacgggc
gacgccccggcgggcgcggagccccccgcggcggagacggagacgccgtccgtggccgcc
ggagcccccgcgcgggccgcgtgcgcgctctgcggcgacgccttcctgcagttctacaac
gaggaccaggaggagtggcatctgaggaactccgtgcgccacgacgacaacaactaccat
ccgctgtgtctggaagattacaaggcgtccctcacaaaggatgagccgcccaaagaggaa
accccacaagaagagaagatggaggaggccatcgagatcaaggacgtcgacgagacgatc
gacaactcggacaacgagtccgttgtcgaggtcgttgacaacgacaaacccgtcgagatc
gacgacctggacgacacgtcggagcccgctccagaaccgcccaaagaggaatcaccggaa
gaaatactagaagatggcgatgaagacgacgttgtgttcaaggcggagccggtaccagaa
gtggtggtggaagattacgacaccgatgacgaaacgcacgcggagcggaagcagcgcgac
gaacaggccaagatcgactacgagaacatacggataaagcaagaacccgtcgatccagac
gacgagccaataataacggcggaggaggaagccgtccttgcggcgcccgacacgtcccgc
gcagccacgctagccgccatcgacggcaacgccgagccgcgcgcgcccaccgcgccgccg
cccgcgcccatcaggatcaacatcagcgcgcccgctcacaagccctccgccgccggcccg
ggcccgggcacggccccggccccgacgagcacggccacgccgccccgcgcggagcccgag
gagagcgacgacgagcccccgccgcccggcgaggagcccgagctctccttcacggtgaag
cccgagctgcagggcgtggccttcagccggcaaccgcccgtgcacaagggctccgagctc
tccggcctctgctccatcatgtga
DBGET
integrated database retrieval system
