Cydia strobilella (spruce-seed moth): 134748591
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Entry
134748591 CDS
T10503
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cstb Cydia strobilella (spruce-seed moth)
Pathway
cstb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cstb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134748591
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cstb03019
]
134748591
Enzymes [BR:
cstb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134748591
Messenger RNA biogenesis [BR:
cstb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
134748591
mRNA degradation factors
3'-5' decay
Ski complex
134748591
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
DEXQc_Suv3
Helicase_C
ResIII
MTR4_beta-barrel
MTR4-like_stalk
Motif
Other DBs
NCBI-GeneID:
134748591
NCBI-ProteinID:
XP_063539452
LinkDB
All DBs
Position
16:complement(11526261..11543853)
Genome browser
AA seq
1251 aa
AA seq
DB search
MPSDTEEEFSDLKPPPIFKDLNERVKEYLLKPERLSIHRWEKSQTHWHRVTDIDSLFKID
DEEIDPYTTLEVVRDPITGEITGIEEVSLPIEDDEELQSMSRAPLPPSLSTRGATTQSPF
LPAGFEEELEKMLEAAQQGDVNIDIENEEVGKFLGEELLTIPPGCKEGVLFAEDGFTMLN
GPEQVKTEGEKMDKDGIDIKANIDLEEVIDSNTHLVGLWKDEDEPRPKTKQNQPQSESDS
MDNDNFLESTIIQPPVELPEIPILNITSSSVRTGVTSTEWAEMIDVSLPVPDFREKIKDM
AHSYPFELDNFQKQAILKLEEGHHVFVAAHTSAGKTVVAEYAIAMSRRNCTRAIYTSPIK
ALSNQKYNDFNKMFGEVGLLTGDLQINATASCLVMTTEILRSMLYCGSDVTRDLEFVIFD
EVHYINNAERGHVWEEVLILLPAHVSIVMLSATVPNTLQFADWVGRTKKRRVYVVSTAKR
PVPLCHYLYTGSGGKSKNERFMVLDQEGNFRLRGYNDAVAAKKARENDFKKNFGPKGGKQ
FLNPKAEQTMWVAFIDHLRQNDKLPVVAFTLSRNRCDQNAENLMSVDLTTAHEKGHIRNF
FQRCLQRLKEPDRRLPQVLRLQRVLVNGIGVHHSGILPLLKEIVEMLFQSGHVKILFATE
TFAMGVNMPARTVVFDEITKFDGLERRILAPAEYIQMAGRAGRRGLDDTGTVIILCKDGV
PDQVKLKGMMMGIPQKLSSQFRLTYAMILSLLRVATVSVEGMMQRSFREFDQVLQSDNYK
KQLQIAEKEYSEKCSTPLPPHLAPLATFYDTAAMYIDVLNDIMPILLNQPKVLKEFVPGK
ILIFSAGPYINQLGIYLNSTGPRQTPYKILALNTAVQDTARYNFDIDESWYRMLSFSTLY
NGIGTEESTMDHTILCIAPKNVMTVTKMTLKIDASIIIQDWEKRQMPRFKDAPVGSSCAT
AIQELSRISHAVKTGASKLDQINLTQSLAVSTGVILNLLDNMVRLQKSLGDLEKSTDIAN
FKSEFAIVYERKQTERKRDKYRRLLSFENLALYPDYQRRLMVLKELSYIDEHDSVILKGR
VACGMGTNELIIAELVFRNVFTDKTPAEIAALLSCFVFQARTAIEPVLTDRLAEAVKAID
QIDQELSSVESKYLVGQFEGQQERLNFGLVKVVYEWALEKPFAEIMDLTDVQEGIIVRCI
QQLHELLIDVKDAAVVIGDPKLQAKMVEASSAIKRDIVFAASLYTTQKETI
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcagatacggaagaggagttttcagacctcaagcctcccccgattttcaaggat
ctgaacgaacgtgttaaggaatatttattgaaaccggaaagattgtcaatccatcgatgg
gagaagtcacagactcactggcaccgagtaacagatatagattcattatttaaaatagat
gatgaagagatagacccttacaccacattagaggtagtccgagaccctataacaggcgaa
ataacaggcattgaagaagtaagcctaccaattgaggatgatgaagaacttcagtcaatg
tcccgagcaccgctgcctccgagcttgtctacccgcggggccacaacccaaagcccgttt
ttgccggctggctttgaggaggaactggagaagatgctggaggcagcgcaacagggggat
gtaaatatagatatagagaatgaagaagtaggaaagtttttgggggaagaactcttaacc
ataccgcccgggtgcaaggaaggagtcctatttgctgaagatggcttcaccatgctaaat
ggtcctgaacaggttaagacagaaggtgaaaagatggataaagatggtattgatattaag
gctaatattgatttggaagaagttattgatagcaatacacatttagtgggactatggaaa
gacgaggatgaacctcgacccaaaacaaaacagaatcaaccacagtcggaatcagattca
atggataatgacaacttcttagaaagcaccatcatacaaccaccggtagaattacccgag
ataccaatattaaacatcactagttcctcagtaaggactggggtgactagtacagaatgg
gcagagatgatagacgtatcgttaccagtgccagattttagagagaaaataaaagacatg
gcacactcttatccgtttgagttggataactttcagaaacaggctattttaaagttagaa
gagggtcaccacgtgttcgtcgccgcgcacacgtcagccggcaagaccgttgtcgccgaa
tacgccatcgctatgtctaggagaaattgtacaagagcaatatacacatcaccaatcaaa
gctttgtccaaccaaaaatacaacgacttcaacaagatgtttggtgaagtgggccttcta
actggagaccttcagataaacgccacagcatcctgcctggtgatgaccacggagattcta
aggtctatgctgtattgtgggtctgatgttaccagggacttggagtttgtgatattcgat
gaagtgcattatatcaataatgctgagcgcggacacgtatgggaggaggtgttaatatta
ctcccagctcacgtcagcatagttatgttgagtgcaactgtaccgaacacactacagttc
gccgattgggtcggacggaccaagaaacgacgggtctatgtcgtgtctacagccaagcga
cctgtacctctgtgccactatctgtacacaggttctggtggcaaatcgaagaacgaaagg
ttcatggttctagatcaggagggtaacttcagacttcgagggtacaatgacgccgtcgcc
gctaaaaaggctagggagaacgattttaagaaaaactttggacctaagggtggaaaacaa
ttcttgaatcctaaagcggaacaaaccatgtgggtggcatttatcgatcatttgagacag
aacgacaagctaccggttgtggccttcactttgtctcgaaacagatgcgaccagaatgca
gagaatctgatgtcagtagatttgacgacagcacatgaaaagggccacattcgaaacttc
tttcaacggtgtctgcagagactcaaggaacctgatagaaggctgccccaggttctacgc
ttgcaaagggtactagtaaatggcattggagtgcatcacagcggcattctgccgcttctc
aaagaaatcgttgaaatgttgtttcaatcaggacatgttaagattctattcgccacggag
acattcgccatgggagtgaacatgcccgcgcgcaccgtggtattcgacgaaatcaccaaa
ttcgacggattagagcgcagaatcttggcacccgctgaatatatacagatggctggtcgc
gctggcaggcgaggtctcgatgacaccggaacagtcatcatcctctgcaaagacggtgtc
cccgaccaggtgaagctgaagggcatgatgatgggcatacctcagaagctgtcttcccag
ttcagattgacgtacgccatgatacttagtctgttgagagtagcaacagtctcagtcgaa
ggcatgatgcagcgttccttccgcgaattcgaccaagtcctacaatcagacaactataaa
aaacagctgcaaatcgccgaaaaggaatactcggagaaatgcagtacaccgctgcctcct
cacttagccccgctggctaccttctatgatacagcggcaatgtatatcgatgtgttgaat
gatatcatgccgattttgttgaaccagcctaaggtgttgaaggaatttgtgccggggaag
attttgatattttcagcgggaccttatattaatcagcttgggatttatttgaattcgaca
ggacctaggcaaaccccgtacaagattctagcactgaacacggcagtccaagacaccgct
aggtataactttgatatagacgaaagttggtacagaatgctgagcttctctactctctac
aatggaataggtaccgaggaaagtacgatggaccacacaatactctgcatagcaccaaag
aacgttatgaccgtaactaaaatgaccctgaaaatagatgcctccatcattatacaagat
tgggagaaacggcaaatgccaaggttcaaagacgccccagtgggttcaagctgtgctact
gcaatacaggagctatctcggatatcacacgccgtcaaaacaggggcatccaaactggat
caaatcaaccttactcagtcgctggctgtgtcgacgggggtgatattaaatctgcttgat
aatatggttagattacagaaatcactaggagacctagaaaaatccacagacatagcgaac
ttcaagtccgaattcgcgatagtatacgaacgtaagcaaacggaacgcaaacgtgacaaa
tacagacgattactatcgtttgaaaacctggctttatatccggactaccagcgaagactc
atggtgttgaaagagctcagttatatagatgaacatgatagtgttattctaaaaggccgc
gttgcttgcggaatgggcaccaacgagctaatcatagcagaactagtattccgcaacgta
tttacggataaaacgccagcagagatcgcggcgttactcagttgtttcgtgttccaagcg
cgaactgccatcgaaccagttctaacggataggttggctgaggccgtgaaagctattgat
cagattgatcaggagttgtcttccgttgagtcgaaatacttggtgggtcaattcgaaggc
caacaagagaggctgaacttcggtctagtcaaggtggtgtacgagtgggcgctggagaag
cctttcgccgagatcatggacctcacggatgtacaggaaggcatcattgttaggtgtatt
cagcaattgcatgagctcctaatagacgtgaaagacgcggcggtagtcatcggagacccc
aaactgcaagctaagatggtggaggcttcttcggccatcaagcgggacatcgtattcgcg
gccagtctctacaccacgcagaaggaaactatctag
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