Cydia strobilella (spruce-seed moth): 134748804
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Entry
134748804 CDS
T10503
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cstb Cydia strobilella (spruce-seed moth)
Pathway
cstb03013
Nucleocytoplasmic transport
cstb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cstb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134748804
03015 mRNA surveillance pathway
134748804
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cstb03019
]
134748804
Enzymes [BR:
cstb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
134748804
5.6.2.5 RNA 5'-3' helicase
134748804
Messenger RNA biogenesis [BR:
cstb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
134748804
mRNA cycle factors
Common to processing body (P body) and stress granule
134748804
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
ATPase
UvrD-helicase
Helicase_RecD
AAA_16
NPHP3_N
SRP54
nSTAND3
AAA_22
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
134748804
NCBI-ProteinID:
XP_063539668
LinkDB
All DBs
Position
17:complement(2756615..2783397)
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AA seq
1036 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLTTSNQ
VNGLGRLDLSSKVSSVTNAIAELQFEEEDEALYSSKELPDHACKYCGIHDPATVVMCNIC
NKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSEAEQMRARQVTPQ
QIGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKPWAGVGHV
IKVPDNFGDDVGLELKSGAGAPADCTASFVVDFIWKSTSFDRMQLALRKFAVDESSVSGY
IYRRLLGHEVDEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVFQLVRQAGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLA
LHEQARALGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVVCTTCVG
AGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPW
PRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQ
RSYLVQHMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRL
NVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKL
VNAQNPGSHFMSTSMFDAREAMVPGSIYDRARPLRDPLAYVGPERAALLHAPVPPAAFPM
RGPQRPFPPMARGLAARRRPPRLSQEPLSQQPPLSLSQGASQPDFSQESAAPDCPSQPDG
LLSQDSTYQGGFRRQY
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgacgcgtatggaccgagctcccaaacgctcacatttctggatactgaagaa
gcggatcttataggagctgatactcagggatcggagttcgaattcactgatttcaccctc
ccttctcagagccaaacccaggcttcgcagcatgatcatggtctaaccacttccaaccag
gttaacggcctaggtcgtttggatctgagttctaaagtatcttctgttacgaatgccata
gcagagttgcaatttgaggaagaagatgaagctctgtatagcagcaaagagctgcctgac
catgcttgcaagtactgcggtatccacgaccccgcgaccgtagtgatgtgcaacatatgc
aataagtggttctgcaatggccgcggcaacacctccggctcgcatatcatcaaccacctg
gtccgtgccaagcataaagaggctgctctacaccgcgacgggccgctgggcgagaccctg
cttgagtgctactcgtgtggtgcaagaaatgtctttgttcttggctttatacccgctaaa
gctgactccgttgtggtgttgctgtgtcgtcaaccttgtgcggcgcagagctccctcaaa
gacatgaactgggaccaggagcagtggaagccattgatttcggaccgcgcgttcctatcc
tggctggttaaagtaccatctgaagctgagcagatgagggctcgtcaagtgaccccgcag
cagatcggccggctggaggagctgtggcgcgacaacgtggacgccaccttccaggacctg
gagaagcccggtgtggacgaggagccccaccaggttctgctcagatacgaagacggctat
cagtaccagaacatcttcggccctctggtcaagctcgaagcggattacgacaagagactg
aaagagtctcaaactcaagagggcattgaggttcgctgggacgtggggctcaacaagaag
accatagcttacttcacgctggccaagactgacagcgatatgaagctgatgcatggagat
gaacttaggctgagatacgtgggcgagctgcacaagccgtgggcgggggtggggcacgtg
atcaaggtgccggacaacttcggcgacgacgtggggctggagctcaagtccggcgccggc
gcgcccgccgactgcacggccagcttcgtcgtcgacttcatatggaagagcaccagcttc
gacaggatgcaactagcgctgcgcaagttcgccgtggacgagtcttccgtgtcgggctac
atctaccggcgcctgctgggacacgaggtcgacgaggtgctgttccgcgtgcacctgccc
aagcacttcagcgcgcccaacctgcccgacctcaaccgctcgcaggtgtacgcggtgaag
cacgcgctgcagcggccgctgtccctgatccagggcccgcccggcaccggcaagaccgtg
acgtcggccaccatcgtgttccagctcgtgcgccaggccggcgggcccgtgctcgtgtgc
gcgccctccaacaccgccgtggaccagctcacggagaagatccaccgcaccgggctgaag
gtcgtgcggctgtgcgccaagtcgagggaggctatggagtcctctgtgtcttttctggct
ttgcatgagcaggcgcgcgcactcggatccgcggacagcgagctgcgcaagctgacgcgc
ctgaaggaggaggcgggcgagctgtcggcggccgacgagcgccgctaccgcgcgctgcgc
cgcgccgccgagcgccgcctgctcgacgccgccgacgtcgtctgcaccacgtgcgtcggc
gcaggtgacccccgcgtggcgcgcatgcgcttccagtccatcctgatcgacgagggcatg
cagtccaccgagcccgagtgcatggtgccggtcgtcctgggggccagacaactcatcctc
gtcggcgaccactgccagctcggacccgtcgtcatgtgcaagaaggccgctaaagcgggc
ctcagccagagcctcttcgagcgcctcgtggtactcggcatccgacccttccgtctcgaa
gtccagtatcgtatgcatcccgaactctctcgtttcccatccgatttcttctacgagggt
tcgctgcagaatggagtcagcgctgaggaacgccgcctacataagatagacttcccctgg
ccgagacccgatcgtcccatgttcttctacgtcacccagggacaggaagagattgccgga
tccggaacgtcctatctgaatcgtaccgaggccgctaatgttgaaaagctgaccactcgc
tttttaaaagccggcgtgcgacctgagcagatcggtattatcaccccctacgaaggacag
aggtcgtatttagtccaacatatgcagtatcaggggagcttgcactctaaactgtatcag
gagattgaggttgccagcgtcgacgcattccaaggaagggagaaggatatcatcattatg
tcgtgcgtgcgctccaacgaacatcaaggtatcggtttcctaagcgatccgaggcgtctt
aatgtggctttgacccgcgcgaagtacggactcattgtcgttggcaaccctaaggttctt
agcaagcagccgctctggaatcatctgctcgcgttttacaaggagcgtcgcgtgctgacc
gaaggcccgctgtctaatctaaaggagtcggcgattcagttcgcgaagccgaagaagctg
gtgaacgcgcagaaccccggctcgcacttcatgtcgacgtccatgttcgacgcgcgcgag
gccatggtgccgggctccatatacgaccgcgcgaggccgctgcgagacccgctggcttat
gtcggcccggagcgcgccgccttgctgcacgcgccggttccgccggcggccttccccatg
cgaggcccgcaacgcccgttcccgcctatggcccgcggcctcgccgctcgccgtcggcct
ccgcgtctgtcccaggagcccctgtcccagcagccgccgctgtcgctgtcgcagggcgcg
tcgcagccagacttcagccaggagtctgccgcgccggactgcccgtcgcaacccgacggg
ctgctctcgcaagactccacgtaccagggcgggttccggcgacagtactga
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