Cydia strobilella (spruce-seed moth): 134748937
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Entry
134748937 CDS
T10503
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
cstb Cydia strobilella (spruce-seed moth)
Brite
KEGG Orthology (KO) [BR:
cstb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cstb03041
]
134748937
Enzymes [BR:
cstb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134748937
Spliceosome [BR:
cstb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
134748937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
Helicase_C
R3H
OB_NTP_bind
DEAD
Ank_2
AAA_19
Ank
AAA_22
nSTAND3
HA2_N
YTH
T2SSE
AAA_14
Ank_5
Ank_4
ATPase_2
AAA_25
PhoH
Cas3-like_C_2
NPHP3_N
SRP54
AAA_16
UvrD-helicase
Viral_helicase1
Rad17
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
134748937
NCBI-ProteinID:
XP_063539877
LinkDB
All DBs
Position
17:complement(12918633..12940555)
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AA seq
1325 aa
AA seq
DB search
MSSKKGKRNLGTKHFPIAESVSIALKIQLDKFLSDENETELKFPTFLSAQERGFIHETVA
KLGLKSKSRGKGVNRYLTIYKRTGSTIIQNDAKLILDSNMRCSITELFNTFPITSKEKDD
LSCCPEKERSPQLAHKPVGQLNNGVAQVPSTTYNPDLVKFREKLPVYEQRQELLNAITHN
QVIIVAGATGCGKTTQLPQLVLEHCQQHKQPARIYCTQPRRLSAVSVAERVAYERMEKIG
QSIGYQIRLESRVSPRTVLTYCTNGLLLRTLMCTDTQLAGVTHVFVDEVHERDKFSDFLL
IALRDALPRCKDLKLILMSATMDTQIFSRYFNNCPVITIPGRLHEVQRYYLEDVLKLTQY
RTKKMVQAERELKLKLKSGQSYWSHLEGQKQTEDTNSKDSKEEKEVALEPTLQADMDEFL
EECFKEGSLDSFCQILYMYLSEGVPVQSAQASSGRTGLMAAARHGLTDTARQMLQIGADP
TVKDKNGKTARDYALEAGHGECAALLASLGVPDGPKETEDNAAENFLLDIYHHTVSEDFI
DHDLMLALIKHIHINLPKGSILVFLPGYDDIVTLRELVQNCMEMNALKYQIFTLHSNMQT
LDQKKVFNPLPNARKIIISTNIAETSITIDDVVYVVDSCKVKEKYYESSGGVCSLQCVWT
SRAGCQQRAGRAGRTKPGHCFHMCSKRRFQTLPLNSIPEILRVPLQELCLHTKLLAVGNT
PIADFLSKALEPPSFLAVRNAVTLLKTIGALTPMEDLTEIGQHLLDLTVEPKLGKMLLYA
CVMKCLDPILTIVCSLANKEPFQISMNPENRKRGSMARKEFAADCYSDHMALLRAFQAWQ
SARANGAERAFCAKNLICGATMEMIVGYRAQLLAQLRALCLVKARGSGDIKDVNLNSEKW
HVVKAVLVSGLYPSTARVDRESGTLRTSKEVKVAFHPSSTLHRGDGIAGAHKSVQNLPTD
WVTFEEISRAGRFCFIRCNTLVTPLTVALFGGPLRLPPGALTQRANPPGLSSDSDSEADE
NNSSPDTAVLTLDDWMAFTADASDAISVYYLRQKLCALVIRRMSNPAKPMTPLDEQILST
VVHVLAAEEKNVGLNQPSGIGQRPKPLTVDAPNWRTRAEEEQYRHDGKYYQQQYQQDYQQ
NYYQNQNAYYQNRNGVRAGWRGDSPSYSHSQYSGPKSPPAGSALLANIEKAGARARYFIA
RDEGDGTSSGLPFAPATTAKLMKVKQEGHQVIVFVARESAARFVGCAALGDGGLDWLCTH
HLPYHAVRHVCNSLAGNVRVAAGGDGAELCAASARALHAALLARRRTASHPHPHPHPHRP
HKHPQ
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atgagttccaaaaagggtaagcgtaatttgggaaccaagcattttcctatagcggagtct
gtgagcattgctctgaaaatccagttggataagtttttaagtgatgaaaatgagacagag
ctcaagtttccgacatttctgtcggcgcaggaacggggtttcatccatgagactgttgcc
aagctgggcttgaagtcgaaatcgcgcgggaaaggtgtaaaccgctacttaacaatatac
aaacggaccggttccacaataattcagaatgacgccaagctcatcctggattcaaacatg
cgctgcagcatcacggagctgttcaacacattccctatcaccagtaaagagaaggatgac
ttgagctgctgtccggagaaggaacggagcccccagctggctcataagcctgtcgggcag
ctgaataatggggttgctcaagtacccagtacaacatataatccagacttagtaaagttt
agagaaaagttgcccgtgtatgaacagaggcaggagctgcttaatgctattactcacaat
caggtgatcatagtagcaggcgccacaggctgcggcaaaaccacacagcttcctcaacta
gtactagagcactgtcagcaacacaagcagcccgcccgcatctactgcacgcagccacgc
cgcctgtccgccgtgtccgtcgcggagcgggtagcatacgagcgtatggagaagatcgga
caaagcatcggctaccagatccgcttggaatcacgtgttagcccccgcaccgtgctcacg
tactgcaccaacggcctcctgctgcgcactcttatgtgcaccgacacacagttggcggga
gtcacgcacgtattcgtggatgaggtgcacgagcgagacaagttcagcgacttcctgctc
atcgcgctgcgggacgcgctcccgcgctgcaaggacctcaagctcatcctcatgtccgcc
accatggacacgcagatcttctccagatatttcaacaactgcccagtgataaccatcccc
gggcgcttgcacgaggtgcagcgctactacctagaagacgtcctgaaactgacgcaatac
cgcaccaagaagatggtacaggccgagagagagctcaaactgaagctcaagtctggccag
agctattggtcacatctcgaaggccagaagcagacagaagataccaacagcaaagatagt
aaagaagagaaggaggtggcgctcgagcccacgctgcaggccgacatggacgaatttcta
gaagagtgcttcaaggaaggcagcttggactcgttctgccagatcctgtacatgtacctg
tcggagggcgtgcccgtgcagagcgcgcaggccagcagcggccgcaccgggctcatggcc
gccgcgcgccacggcctcaccgacaccgcccgccagatgctgcagatcggtgcggatccc
acagttaaagacaagaacggcaaaaccgcccgggactatgccctcgaggccggacacggc
gagtgcgccgcgctcctcgcttccctcggtgtccccgacggccccaaggaaaccgaggac
aacgctgccgaaaatttcctgctcgacatctaccaccacaccgtctccgaagatttcatc
gaccatgatctcatgttggccctcattaaacatatacatatcaacctccccaaaggcagc
atattggtcttccttcccggatacgatgacatagtgacgcttagagaattagtacagaat
tgcatggagatgaacgcgctaaagtatcaaatattcacgttgcacagtaacatgcagacg
ctcgatcagaagaaagtgttcaacccgcttccaaatgcgagaaaaatcatcatctcgacg
aacatagcggagacatcgataactatagatgatgtggtgtatgttgtggattcatgcaaa
gtgaaggagaagtactacgaatctagtggtggagtgtgttctttacagtgtgtgtggact
tctcgagccggctgccagcagcgcgcgggccgtgccggtcgcaccaagcccggacattgc
ttccatatgtgctccaagcggaggttccagaccttaccgctcaactccatcccagagatc
ctcagggtgcctctacaggaactgtgccttcatacgaagcttctagccgttgggaatacg
cctatagcggactttctatcaaaagcattggagcctccatcgttccttgcggtgagaaac
gccgtaacgctcctaaagaccataggagcgctgacacccatggaagatttgacggaaatc
gggcagcatctgctagatttgaccgtggagccgaaattagggaagatgctcctgtacgcg
tgcgtcatgaagtgcctcgatccgatcctgacgatagtctgcagcttggccaataaggag
ccgttccagatatccatgaacccggagaacaggaagcgggggagtatggcgcggaaggaa
ttcgcggcggactgttattccgaccatatggcgttgctgagagcgttccaagcgtggcag
agtgcacgagcgaacggcgccgaacgagcgttctgcgctaagaacttaatatgcggagct
accatggagatgattgtgggctatagagcgcaactgctagctcagctccgagcgctgtgc
ctagtcaaagccagaggctcgggcgacattaaagacgtcaacctcaactctgaaaaatgg
cacgtcgtcaaagccgtcctagtgagcggcctgtacccttcgacggcccgcgtcgaccga
gaatcgggaacgttaaggacttcaaaagaagtgaaagtggccttccatccgagctcgacc
ttacatcgcggcgacggtatagcgggcgcgcacaaatccgtacaaaacttgccgacggat
tgggtcacttttgaagagatatccagagcgggccggttctgcttcatacgctgcaacacg
ttggtgacacccctgaccgtggcgttattcggtgggcctttaagattaccgcccggggct
ctgacgcagcgagcgaatcctccagggttgtcgagcgattccgacagcgaggcggacgag
aataactcctcacctgacacagcagtgctaaccctggacgactggatggctttcacggcg
gacgcttcagacgctataagcgtctattacttgagacagaagctctgcgcgttggttatc
cgtcgcatgtcgaaccctgctaaaccaatgactcctttagacgagcagatcctgagcact
gttgtgcacgttttagcggctgaagaaaaaaacgtgggtctgaatcagccgtcggggatc
ggtcagaggcctaagccgctgacggtggacgcgccgaactggcggacgagagctgaagag
gagcagtacaggcacgacgggaaatactaccagcagcagtatcagcaggactaccagcag
aactactaccagaaccagaacgcttactaccaaaaccggaacggcgtccgggcgggctgg
cgcggcgactcgccgtcctactcgcactcgcagtactcggggcccaagagcccgccggcc
ggcagcgcgctgctcgccaacatcgagaaagcgggcgcgagagcacgatattttatcgca
agagatgagggagacggcactagtagcgggctcccgttcgcacccgccaccaccgccaag
cttatgaaggttaaacaggaggggcatcaagtgatagtgttcgtggcgcgcgagtcggcg
gcgcggttcgtggggtgcgccgcgctcggcgacggcgggctggactggctctgcacacac
catctaccctaccatgccgtcagacacgtgtgcaactcgctggcgggcaacgtgcgcgtg
gcggcgggcggcgacggcgccgagctgtgcgccgcctccgcgcgcgcgctgcacgccgcg
ctgctcgcccgccgccgcaccgcctcccacccgcacccgcacccgcacccgcaccgcccg
cacaaacacccgcagtag
DBGET
integrated database retrieval system
