Cydia strobilella (spruce-seed moth): 134750028
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Entry
134750028 CDS
T10503
Name
(RefSeq) fibril-forming collagen alpha chain-like
KO
K19719
collagen type II alpha
Organism
cstb Cydia strobilella (spruce-seed moth)
Pathway
cstb04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cstb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134750028
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cstb00536
]
134750028
Glycosaminoglycan binding proteins [BR:
cstb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134750028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Ig_3
I-set
ig
Ig_2
C2-set_2
VWC
FnI_RECK
Pirin_C_2
CFC
Motif
Other DBs
NCBI-GeneID:
134750028
NCBI-ProteinID:
XP_063541181
LinkDB
All DBs
Position
2:21691627..21712896
Genome browser
AA seq
1612 aa
AA seq
DB search
MKVLIFSGPTRRPVHIGVRGEQAGYPRVKVSVRQLRLVRGQSRTVDCTPEGYPLPVIQWT
KEEGGLSQRTRQSGNQLIISNAQDEDRGNYVCSGLVDGNSVYTDYLTVDIVGGDTSPRCI
DQGRSWGEGETWSPNNCTLCQCFGGRTNCSVLPACLTGEQAGPSRIRISERQLRITRGQS
RTVDCSPEGFPVPIIQWSKEGGVFGKGTRQSGNALVITDAHDDDRGTYVCSGVVAGRAVL
SEYFTLEVVGGHDHAAVVGTSVRGVPGSDGEEGHPGPPGAPGANGVPGAPGLPGPTGPLP
DVNDHLRRQLASNGDKGPPFDPYNYMQASVGAPGIRGIQGPPGPPGPQGFQGARGEPGEP
GLPGQQGPPGERGPQGLAGKDGGPGNDGEPGPAGAAGQNGPRGAPGLPGIQGLKGHRGYD
GKDGAKGDQGLAGEKGPTGQPGVMGPPGPVGPMGSRGERGREGSPGTPGMRGVDGVAGPP
GPVGNVGKPGSPGFPGAPGLKGEQGAVGPQGSQGMQGPRGESGRPGQPGEAGPQGLAGRD
GLPGEKGVSGQPGNAGPQGFPGPRGLPGVAGDPGIHGAKGEPGQIGERGMRGESGIRGEP
GAPGPRGLPGSVGSEGKRGKRGLRGPAGNIGPQGDRGQPGLRGLPGPDGPIGARGQPGER
GNVGLPGEKGTTGDAGRPGPQGLQGPRGLVGRPGISGKQGPPGDRGVPGADGRPGEMGHQ
GLQGTPGPMGSPGERGLQGEPGKDGEIGQTGPEGRKGDAGRDGSPGIQGAQGLPGPAGER
GPTGPAGPTGFPGMPGAAGLPGSSGKDGEPGVAGPAGPPGPAGPRGERGFNGDRGLPGPA
GAPGEKGDVGAQGPDGPAGPEGPRGSKGQQGHPGALGLPGPRGPTGASGEKGERGSPGPA
GLDGPTGRQGEQGPQGPVGPAGPPGEPAERGEPGTPGTPGEAGANGSPGERGQPGLQGVQ
GLPGSPGLTGMPGIKGDRGYSGPKGQQGAPGSPGIAGEPGLRGLPGLAGAKGARGEHGLK
GESGHPGLPGRPGDLGPQGPQGSPGPAGTPGIAGPKGATGDAGRPGAPGPQGLMGPQGPE
GVKGERGNEGETGPQGPAGSAGPPGERGPSGLPGMAGQPGPQGLRGAQGESGIPGKSGAD
GAPGPIGAPGLQGPPGPMGEQGPEGRPGKLGQPGIPGRPGDKGPAGQPGISGPQGTPGLQ
GPPGQAGPPGLAGERGQRGEAGPAGVDGPRGPYGKQGAPGLDGAKGERGEAGLDGAKGHA
GLPGLPGMVGAPGRLGERGLPGPTGLPGKDGDSGPRGTPGRDGAPGPQGPAGPPGGRGPA
GEPGRHGPPGPAGPPGPPGPAGEGLAYDAAALAAMMQQGSIKGPDPLNDDPNLLPSRFFK
DDMTAAERKEIVTKAYERLKVSLDKFLRPDGTQDAPGKTCGDIKYHHPGFKSGQYWIDPN
GGDIKDAILVHCDMDTGSSCIYPKPMESKDISYKGKEKEVWLSELEDGFTITYKADHSQL
TYLQLLSGRAAQNVTLHCRNTVGYYDPEAHHHRRGLKLLAYNDAEILPRANNRLRYSAVL
DDCQYKSQEWAKTIVEYSTDKSGRLPLLDVAVRDLGRGQQAFRVELGLACFT
NT seq
4839 nt
NT seq
+upstream
nt +downstream
nt
atgaaggttcttattttttcaggacctacccgcagacctgtccacattggagttagaggt
gaacaggcaggataccctagagtaaaagtcagcgtgcgccaactgaggctggtcagggga
caaagcaggactgtagattgcactccggagggataccctctgccggttatccagtggaca
aaggaagaaggcgggctcagccaacgaaccaggcaaagcgggaatcagctaattatatct
aacgcccaagacgaagaccggggaaactatgtgtgctccggacttgtcgacggaaattcc
gtttatactgattatcttaccgtcgatattgtaggcggcgatacaagtccgcgctgcatc
gaccaaggccgctcgtggggggagggcgagacttggagccccaacaactgcacgctctgc
cagtgcttcggcggacgcaccaactgctccgtgctgcctgcctgtcttacaggggaacaa
gcggggccctctagaattagaattagtgagcggcagctgaggataacaagaggacaaagc
cggactgttgactgctctcctgagggattccctgtgccgatcatccaatggagcaaggaa
gggggcgtgttcggaaaagggaccagacaaagtggaaatgcgctggtaataactgacgcc
cacgatgatgaccgtggaacttacgtgtgctccggggtcgtggcgggaagagccgtcctc
agcgagtacttcactcttgaagtagttggaggtcacgaccatgcggctgtagtgggtaca
tctgtccgcggcgtgcctgggtcagacggcgaggaggggcacccggggccgcccggcgct
cccggcgcaaacggtgtccccggcgcgcccggcctgcccggcccgaccggccccctgcca
gatgtgaatgatcatctgagacgacaacttgcaagtaacggagacaaaggaccaccattc
gacccatataattatatgcaagcttctgtaggcgctccgggcatcagaggcatacaggga
ccaccaggaccaccgggaccgcaaggttttcagggagcgcgaggcgagcctggagagccg
ggtttgcccgggcaacaaggaccgccgggtgaaagaggaccccaagggttagctggaaaa
gatggtggtccgggcaacgacggcgaacccggaccggcgggggcggcggggcagaacgga
ccgcgcggcgcgccgggcttgcccggcatccagggcctgaagggccatcgcggctacgac
ggcaaggacggcgccaagggcgaccagggacttgctggagaaaagggaccgaccggccag
cctggagtgatgggaccaccgggacctgtgggcccgatgggatcccgtggagagagaggt
cgcgaaggctctccgggaactcccggcatgcgcggcgtcgacggtgtagcgggaccgcca
ggacctgtgggtaacgttggaaaacccggttctccaggatttccaggcgcaccaggcctg
aagggcgagcaaggcgcagttggcccccagggcagccaaggcatgcaaggtcctagggga
gaatcaggtcggccagggcaaccaggagaagccggtccgcagggcctcgctggtcgcgac
ggtctccctggggagaagggcgtgtccggacaaccaggaaatgcggggcctcaaggcttc
cctggccccagaggcttacccggtgtagctggcgacccaggaattcatggggctaaagga
gaaccgggtcaaattggagaaagaggtatgagaggtgaatcaggcatcagaggagagcca
ggtgctccaggaccacgtggtcttccagggagtgtaggatctgagggcaaacgcggcaag
cgaggacttaggggacctgctggcaacattggacctcaaggagacagaggtcaaccaggg
ttgagagggttgcccggtcctgatggcccgattggagctaggggccaaccaggtgaaaga
ggaaatgttgggttacctggcgagaaaggtactactggtgacgctggaagacctggccct
caaggattgcaaggtcctagaggtttagtagggcgaccaggaatatctggaaaacaaggg
ccacctggagatcgtggtgtacctggagcagatggtagacccggagaaatgggacatcaa
ggcttacaaggaacccctggacccatggggagccctggcgaacgaggattgcaaggcgag
cccggaaaagatggagagataggccagactggtcctgaaggccggaagggtgacgcagga
cgagacggtagccctggcatccagggcgcacagggtctcccggggcccgctggtgaaaga
ggaccgactgggcctgcgggaccgacaggtttccctggtatgccgggagctgccggatta
cccggatcttcgggcaaagacggtgagcccggcgtggcggggccggcgggcccaccgggg
ccggccgggccgcggggcgagcggggcttcaacggcgaccgcggcctcccggggccggcg
ggcgcacccggcgagaagggcgacgtgggagcgcaaggacctgatggacccgcgggtccg
gaaggtccgagaggcagcaaaggtcaacaaggacaccccggagctttgggcttgccggga
ccaagaggacccactggagcctcaggcgaaaaaggcgaacgcggttcaccgggccccgcg
ggtcttgatggacctactggacgtcaaggagaacaaggtcctcaaggacctgtgggcccg
gccggaccccctggtgagccggccgagagaggcgagcccggtacgcccggcacacctggt
gaagccggcgccaacggctcgccaggcgagcgcgggcagcccggcctgcagggcgtgcaa
ggcttgcccggctcgcccggcctcacgggcatgcccggcatcaagggcgacaggggctac
agcggacccaagggccaacaaggcgctcctggaagcccaggcattgctggagaacccggc
ctgcgaggccttccgggcttagcgggcgctaagggggcacgaggcgagcatggccttaaa
ggagaatcaggacatcctggtctaccgggaagacctggtgaccttggaccacagggtcct
caaggaagccctggaccggcgggaacacccggtattgctggaccaaaaggagcaaccgga
gatgctggcagaccaggcgccccggggccccaagggctcatgggccctcagggtccagaa
ggcgttaaaggcgagagaggcaacgagggcgagaccggaccccagggtcccgcgggttct
gcaggaccacccggagagaggggaccaagtggcttgccagggatggcaggacagcccgga
cctcaaggattacgcggagctcagggtgaaagtggaatcccgggcaaatcaggtgctgac
ggtgctccaggtcccataggggctcctggactgcaaggcccgcccggtcccatgggagaa
caagggccggagggacgtcccgggaaactggggcaaccgggcattcctggcaggcctgga
gacaaggggccggccgggcagccgggaatttctggaccacagggtacacctggattacag
ggccctcctggtcaagctggacctcccggtttggcgggtgaacgcggacaacgcggcgaa
gctggtcccgccggcgtggatgggcctcgagggccatacggcaagcagggtgctcctggc
ctcgacggcgctaaaggagagagaggcgaagctgggttggatggagccaaggggcacgcc
ggcctcccaggcctgccgggaatggtcggtgcgccgggacgcctgggagaacgaggcctg
cccggaccgacgggactaccaggaaaagacggcgattctggcccaagaggcactcccggg
cgcgacggtgctcctgggcctcaagggccggcgggtccgcccggaggccgaggacccgct
ggcgagcccggacgacacgggcctcctggcccggccgggccgccgggccctcccggaccc
gccggcgaaggcctggcttacgacgctgctgctcttgctgcaatgatgcaacagggttca
attaaaggccccgacccacttaacgatgatcccaacttgctgccatcgcgtttcttcaag
gatgacatgacagccgcagagcgcaaagaaatagtgactaaggcgtatgaacgtctaaag
gtgtccttggacaaatttctgaggccagacggcacgcaggacgcgcccggcaagacttgt
ggagacatcaaatatcatcaccccggatttaagagtggtcagtactggatcgacccgaac
ggcggcgatatcaaggacgcgatcctggtgcactgcgacatggacacgggcagtagctgc
atctaccccaagccgatggagtctaaggacatctcctacaagggcaaggaaaaggaggtc
tggctgagcgagctggaagacggcttcactataacttacaaggcggaccacagccagctg
acgtacctgcagctgctgtcgggccgcgccgcgcagaacgtgacgctgcactgccgcaac
actgtcggctactacgaccctgaagcgcaccatcaccgccgcggactaaagctgctcgcc
tacaacgatgccgagattctgccccgcgccaacaaccgcctgcgatattcggcagtgctg
gatgactgccagtacaagtcgcaagaatgggcgaagactatcgtggagtactcaacagat
aagtccgggcggctgccgctgctggacgtggcggtgcgcgacctaggccgcggccagcag
gccttccgcgtcgaactcgggctggcctgctttacgtag
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