Cydia strobilella (spruce-seed moth): 134750175
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Entry
134750175 CDS
T10503
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cstb Cydia strobilella (spruce-seed moth)
Pathway
cstb03013
Nucleocytoplasmic transport
cstb03015
mRNA surveillance pathway
cstb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cstb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134750175
09122 Translation
03013 Nucleocytoplasmic transport
134750175
03015 mRNA surveillance pathway
134750175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cstb03019
]
134750175
03041 Spliceosome [BR:
cstb03041
]
134750175
Enzymes [BR:
cstb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134750175
Messenger RNA biogenesis [BR:
cstb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
134750175
Spliceosome [BR:
cstb03041
]
Complex C
Other components
EJC/TREX
134750175
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
134750175
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
134750175
NCBI-ProteinID:
XP_063541369
LinkDB
All DBs
Position
19:complement(13409560..13411176)
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AA seq
425 aa
AA seq
DB search
MADNDDLLDYEDEEQAEQQTADGATEAAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQIEPSENHVYVLVMCHT
RELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNS
KKLNLKHLKHFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCIA
LAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITMVSDEGDAKILNEVQDRFDVNITELPEEIELST
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggctgataatgacgatcttttggactacgaagacgaggagcaggcagagcagcaaacc
gccgacggagcgacagaagcggcgccaaagaaagaggttaagggatcctacgtatctatc
cacagttccggcttcagagatttcctgttaaaacccgaaatattgcgagctatagtcgac
tgcggttttgagcatccgtcagaagtgcagcatgagtgtattccgcaggccgtccttggt
atggatatcctttgccaagccaaatccggtatgggtaagacagctgtgtttgtcttagcg
acgcttcaacagatcgagccgtcggaaaaccatgtgtacgtgcttgttatgtgccacact
cgcgagctcgcgttccaaatcagtaaagagtacgagcgtttctcaaaatacatgtctggc
gtgcgagtttctgttttcttcggtgggatgccgatccagaaggacgaggaggtactgaag
accgcctgcccgcacattgtcgtcggcacaccgggcagaatcctggcgctagtcaacagc
aagaagctcaacctgaagcatttgaaacacttcattttggacgaatgtgacaaaatgttg
gagtcgctagacatgagaagagacgtgcaggagatcttcagaaatacacctcacgggaag
caagtgatgatgttctccgctacattgagcaaggaaatcaggccagtgtgcaagaagttc
atgcaggaccctatggaagtgtatgtagatgacgaagctaagctgacattgcatggtctg
cagcagcactatgttaagctaaaggagaatgagaagaacaagaaactttttgagctgctg
gatgtattggaatttaatcaagtagtgatatttgtgaaatctgtgcagcgctgcatagct
ctagctcaattgctgaccgaccagaacttccctgctattggaatccatcgtaacatgacc
caagacgagcgtctgtcccgctaccaacaattcaaggacttccagaagagaatccttgta
gctacaaatctgttcggacgtggtatggatattgagcgagtcaacattgtcttcaattat
gatatgcctgaagattccgacacctacctgcatcgtgtggcacgtgccggacgattcggt
accaaaggcctggccattaccatggtatctgacgaaggtgacgctaagatcctgaatgaa
gtccaagaccgctttgatgtcaacattactgagcttcccgaagagattgagctatctacc
tacattgagggacgatag
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