KEGG   Cydia strobilella (spruce-seed moth): 134750534
Entry
134750534         CDS       T10503                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
cstb  Cydia strobilella (spruce-seed moth)
Pathway
cstb03013  Nucleocytoplasmic transport
cstb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cstb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    134750534
  09122 Translation
   03013 Nucleocytoplasmic transport
    134750534
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cstb03019]
    134750534
   03041 Spliceosome [BR:cstb03041]
    134750534
Messenger RNA biogenesis [BR:cstb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     134750534
Spliceosome [BR:cstb03041]
 Complex C
  Other components
   EJC/TREX
    134750534
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    134750534
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40_Prp19 WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 ANAPC4_WD40 WD40_Gbeta WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR3_2nd Beta-prop_Aladin Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_EML Beta-prop_NOL10_N WD40_MABP1-WDR62_2nd PAC11 Beta-prop_TEP1_C Beta-prop_Vps41 eIF2A Beta-prop_WDR36-Utp21_1st Beta-prop_IFT140_1st Beta-prop_HPS5 WD40_MABP1-WDR62_1st DSE1_N WD40_RFWD3 NBCH_WD40 Tricorn_2nd WDR90_beta-prop_4th Beta-prop_WDR35_TULP_N TRM82_WD Beta-prop_EIPR1 PROPPIN Beta-prop_SCAP Beta-prop_ELP1_1st Beta-prop_Nup120_160 PD40 CNH Beta-prop_DCAF4 Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 134750534
NCBI-ProteinID: XP_063541800
LinkDB
Position
20:complement(74277..80132)
AA seq 329 aa
MKEPKQTPIKDLAELRAYFASHNAVREYIAHSSKVHSVGWSCDGRKLASGSFDKTVAIFN
LERNRLVQEFVFRGHTGSVDQLCWHASHPDLLSTASGDKSVRIWDTRSRKCAAVIPTKGE
NINIAWAPNGAAIAVGNKEDLVSFIDTRTYKVVTEEQFHFEVNEISWNNSSDLFYLTNGL
GCVHILSYPGLALQTVLKAHPGTCICIEHDPTGRYFATGSADALVSLWDAQELAALRVFS
RLEWPVRTLSFSFDGRLLASASEDHVIDIGDTETGEKVAEIPVSAATFTVSWHPSRYLAA
FACEDKEPSERKRDAGNLKLWGLPNQDRN
NT seq 990 nt   +upstreamnt  +downstreamnt
atgaaggaaccgaagcagactcctataaaggacctggccgagttgcgcgcgtacttcgcg
tcgcacaacgcggtccgcgagtacatcgcgcactcgtccaaggtgcactcggtgggctgg
tcatgcgacggccgcaagctcgcctcgggttccttcgacaagaccgtcgccatcttcaac
ctcgagcggaaccgactggtgcaagagtttgtgttccgagggcacactggctcagtggat
cagctgtgctggcatgcatcacacccagacttgctcagcaccgccagcggggacaagtcc
gtgcgcatctgggacaccagatctcgcaagtgtgcggctgtaatcccgacgaagggcgag
aacatcaacatcgcgtgggcaccgaacggcgccgccatcgccgtcggcaacaaggaggac
ttggtgtcgttcatagacacgcgcacctacaaagtggtgacagaggaacaattccacttc
gaggtgaacgagatctcgtggaacaacagctcggacctgttctacctgaccaacgggctg
ggctgcgtgcacatcctgtcgtacccgggcctggcgctgcagaccgtgctgaaggcgcac
ccgggcacgtgcatatgtatcgagcacgaccccacggggcggtacttcgccacgggctcg
gccgacgcgttggtctcgctgtgggacgctcaagaattggctgcgctcagagtattttcc
agactggagtggccggtgcgcacgctctcgttcagcttcgacggccgcctgctggcgtcg
gccagcgaggaccacgttatagatatcggggacacagagacaggagagaaagtagcagag
atcccggtgtcagcggccacattcactgtatcctggcatcccagccggtacctggccgcc
ttcgcctgcgaggacaaggagccctcggagaggaagagggatgccggcaacctcaagctg
tgggggctgcccaaccaggaccgcaactaa

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