Cydia strobilella (spruce-seed moth): 134751996
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Entry
134751996 CDS
T10503
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cstb Cydia strobilella (spruce-seed moth)
Pathway
cstb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cstb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134751996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cstb03041
]
134751996
Spliceosome [BR:
cstb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
134751996
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
PRP4
Beta-prop_Aladin
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_DCAF4
Beta-prop_SCAP
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
WD_LRWD1
MIOS_WD40
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
134751996
NCBI-ProteinID:
XP_063543615
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Position
24:8265942..8295833
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AA seq
534 aa
AA seq
DB search
MSDDEDVILVKRSKQVHYGSLEEQEKARLAALAAAAKEGVEDGGKDLGDIHVSNEYMDLE
DEMSKDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAERRVRLRDL
LSYLGEDAIHKKLEEEEARIERDRGREGTWYHEGPKELREARLWIAKYSLPRAKARLNMA
RAELQLAGSVRAAGKQDAQRRAAAMHIYCSQVGDTRPISFCRFSSDSQMLITSSWSGLVK
VWSVPECQELQVLKGHTCNVSGATFHPAAAMPQHFKDKLKITSDPESQPMETGGSSEEKS
EVCTMASCAYDGTVHLWNFSRSSPLASLPGHGPRRVSRVEFHPSGRMLAAAVFDSSWRLW
DLETATEVLHQEGHAKEVYSVAFQCDGSLAVTGGMDAFGRVWDLRTGRCVMFLEGHLGPV
LGVDWSPCGYTLATAAQDHQAKIWDLRKRSCVYTIAAHTHLLSDVRYQKSHGHFLMTTSY
DKSAKLWSNPAWHPLRSLAGHDNKVMSGDISYDNKYIATCSYDRTFKLWAPDLA
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgatgaagatgtaatattagtgaaacgaagtaaacaggtccactatggatca
ctggaagagcaggaaaaggcgcggcttgcagccctggctgccgcggccaaggaaggcgtg
gaagatggaggaaaagacttgggagacatccatgtttcgaatgaatacatggacctggaa
gatgagatgtccaaagacaaaaaggctttgcttgaggaattcgagcgcagacggaaggcg
cgtcagctgaatgtgtctacagatgatgatgaggtgcgcaggagtcttcggcagttagga
gagccggtgtgcctgttcggcgaggggcccgccgagcggcgcgtgcgcctccgcgacctg
cttagctacctgggcgaggacgcgatccacaagaagttagaagaggaggaagccaggata
gagcgagacagaggacgcgaagggacctggtaccacgagggacctaaagagttacgcgaa
gctagactttggatcgctaaatactcgctaccgagggctaaagcaagattaaacatggcg
cgggccgagctgcagctggcgggcagcgtgcgcgccgccggcaagcaggacgcacagcgc
cgcgccgctgccatgcacatctactgcagccaggtcggtgatacgaggcccatcagtttt
tgccggttcagctccgacagtcagatgttaattacgtctagttggtcaggcctcgtcaag
gtctggtcggtgcccgagtgccaagaactccaggtcctgaagggtcacacctgcaacgtg
agcggcgccaccttccaccctgctgccgccatgccccaacatttcaaggacaagttaaaa
ataacgtcagacccagagagtcagcctatggagacaggtggctcgagcgaggaaaaatca
gaagtttgcacgatggcgtcctgcgcttacgacgggacagtccatttatggaattttagc
aggtcgtccccgctggcgtccctgccgggccacgggccgcggcgcgtgtcccgcgtggag
ttccacccgtcgggccgcatgctggcggccgcggtcttcgacagcagctggaggctgtgg
gaccttgagactgcgactgaggtcctgcaccaagaaggtcacgcgaaagaggtgtacagc
gtcgcattccagtgtgatgggtctcttgcggtcaccggtggcatggacgcgttcggccgc
gtatgggacttacggacgggacgctgcgtcatgttcctagagggtcatttaggccccgta
ttaggggtcgattggtccccgtgcggttacacgctcgctactgccgcgcaagaccatcag
gcgaaaatatgggacctaaggaagagatcttgcgtgtacactatagcggcacatacacat
cttctaagcgacgtgcgataccaaaagagccacggtcacttccttatgacgacctcatac
gacaagagcgcaaagctgtggtccaacccggcctggcatcccctccgctcgctcgccgga
cacgacaacaaggtgatgtcgggcgacatatcctatgacaacaagtacatagcgacgtgc
tcatacgaccggaccttcaagctgtgggcgccggatctcgcgtga
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