Cydia strobilella (spruce-seed moth): 134752187
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Entry
134752187 CDS
T10503
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
cstb Cydia strobilella (spruce-seed moth)
Pathway
cstb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cstb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134752187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cstb03041
]
134752187
Enzymes [BR:
cstb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134752187
Spliceosome [BR:
cstb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
134752187
Complex C
U5 SnRNP specific factors
134752187
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
BRR2_plug
Helicase_C
AAA_22
PhoH
DEXQc_Suv3
TcA_RBD
Motif
Other DBs
NCBI-GeneID:
134752187
NCBI-ProteinID:
XP_063543869
LinkDB
All DBs
Position
24:4133692..4184247
Genome browser
AA seq
2146 aa
AA seq
DB search
MADAAARQLQYEYKANSNLVLQADVRLIERRGRDEATGEVLSLSGKLLGTRMGDRAQRTK
PDKAEERKVKRQKRDEASYELSKSKGNRAAWADENTGAVYRPRAQHTRHAYELLLSFMQG
SLGDQPRDILCGACDEVLVVLKNDRLKDPEKKKEIELLLGSIPDDRFALLVNLGKKITDF
NISSPTEGKTEIDETYGINVQFEESSDEDDEDAYGEVREEDREDGEGSDNEKEKESSAEE
DSDGEGKRNAIHANLSEEQSHKRRDTVIHPMDIDAYWLQRRLSRHFPDAMLSQAKSSEVL
KALDDAADDRDLENRLVLMLGYDCFEFVKILTKYRYTVLYCTKLASSQSESERQALRDEM
SRQPHLMKILAQLETGKGDDESAQQSEAPRKRHKAEAAGSGQAAGNRQMLQLEELVFAAG
AHFMANKRCQLPAGSFRKQRKGYEEVHVPALKPTAFKPGETLKPVEELPKYVQPAFEGFK
TLNRIQSRISAAALDEDFNLLVCAPTGAGKTNVALLCILREVGKHVNADGTVNASDFKMI
YVAPMRSLVQEMVGNFSKRLAPYNLKVSELTGDHQLTREQIEATQLIVCTPEKWDIITRK
GGERSFTNLVRLIIIDEVHLLHDERGPVLEALVARTLRTVEQTQEPVRLVGLSATLPNYR
DVADFLRVNPDQGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKTMEHAGRN
QILVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASTEVLRTEADQVKNPELRELLP
YGFAIHHAGMSRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIVKGTQVYSPEKG
RWSELGALDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQMIGKLPD
MLNAEIVLGSVQSVRDAVAWLGYTYLQIRMKREPALYGIPPEKLQEDKFLELHRADLIHT
AASLLDKAGLIKYERKSGHFQPTELGRIASHFYCTYETMQSYNQLLKPTLGEIELFRVFS
LSAEFRNITVREEEKLELHKLMERVPIPIKESIEEPSAKVNVLLQAYISQLKLEGFALMA
DMVYVTQSASRLLRAIFEIVLHRGWAQLVDKTLALCKMVDRRMWQSMSPLRQFRKMPEEV
IKKLEKKNFPWEKLYELGPNEIGELVRAPKLGKMIHKYVHQFPKLELSTHIQPITRSTLR
VQLTITPDFHWDEKIHGQSEAFWILVEDVDSEVVLHHEFLLLKEKYCKDEHTVKLFVPVF
EPLPPQYFLRVVSDRWIAAETQLPVSFQHLILPEKNMPPTELLDLQPLPVSALRNPKFEE
LYKETFKQFNPVQTQVFNAVYNTDDNVFVGAPSGSGKSVIAELALLRLLSSNAAGRVVYL
LPKDALADIVFSDWYHKFATPDGFNLKVVQLTGETATDHKLLNRGQIIITTAEKWDVLSR
RWKVRKSVQSVSLFIVDALQLLGGDEGPVLEVVCSRMRYISSQIGRQIRIVALSLPLADA
RDVAQWLGCNSNATFNFHPSVRPLPLELHIQGFNIPHAASRLSSMTKPIYNAIARHAGSR
PAAVFVPARRDSRLLAADLLALAAAQGRPARFLHANQDEMQKYLDKIQDKMLKETLGAGV
SYLHEGVDPDDRRVVQFLVSSGAVQLCVVAAELAWAFAAHVHTVIVCDTHTYNGKLHTYE
QYPITTVLHMLGRACPSSEDDHSVAVLMCRAHHKTFFTKLLLDCLPLESHLDHRLHDHMN
AEIVTKTIENKQDAVDYLTWTFLYRRLTMNPNYYNLQGVTHRHLSDHLSELVETTLTDLE
QSKCIAIEEDMDLQPLNLGMIASYYYINYTTIELFSLSLTSKTKIRGLLEIISSAAEYTE
LCIRHREENIIKALANKVPHKPTSTSGTVKYNDPHVKAHVLLQAHLSRTQLPQELQQDTQ
LVLTKAIRLIQACVDVVSSSGWLSPAVAAMELAQMVTQAMWAKDSYLRQLPHFSPEVVQR
CTDKGVETVFDVMELEDAARAKLLQLSPAEMADVARFCNRYPNVELVYEVKEERRLRVGK
PIVVEVALEREDDVVGPVIAPFFPQKREEGWWVVIGAPKTNSLLSIKRVSLGKSARVRLD
FVCGAAGRHAYTLYFMSDAYLGADQEYKFHVDVAEAADDDDDDSDE
NT seq
6441 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgctgcggctagacagttgcagtacgagtacaaagcgaattcaaatctcgta
cttcaagccgatgtacggcttattgagcgccgcggccgtgatgaggcgacgggagaggtt
ctttcgctgtcgggaaagctcttaggaacgcgtatgggcgaccgtgctcagcgcacgaag
ccagataaggctgaggagcggaaagtgaaacgacagaaacgtgacgaggcatcatatgag
ctatcaaagtccaaaggcaaccgcgccgcctgggcagacgagaacaccggagcagtgtac
cgtcccagagcccagcacactagacatgcatatgaactgctgctgtccttcatgcagggt
tccctcggagatcagccgagagacattctttgtggagcctgtgatgaggtacttgtagtg
ctcaagaatgacagactgaaagatcctgagaagaagaaagagatagagttgctccttgga
tctattcccgatgacagatttgccctgcttgtcaacttaggcaagaaaataacagacttc
aacatcagctcgccgacggagggcaaaactgagatcgacgagacatacggcatcaatgtg
cagtttgaagagtcttcggatgaggacgacgaggatgcctacggagaggtacgcgaggaa
gacagagaagacggagaagggtcagacaatgagaaagagaaggagagtagcgcagaagag
gacagcgatggcgagggcaaacgcaacgccatacacgctaatctgtcagaagagcagtca
cacaagcgtcgcgacacagtcatccacccaatggacattgatgcctattggctacaaaga
cggctttccaggcatttccccgatgctatgctgtcacaagccaaatccagcgaagtactt
aaggcgctagatgacgctgctgacgacagagatttggaaaatagactagtgttgatgctc
ggttacgactgcttcgagttcgtcaagatactgaccaaatacagatacaccgtgttgtac
tgcacgaagctcgcctcctcccaatctgaaagcgagcggcaagcgctacgcgacgaaatg
agccggcagccacatctcatgaagatcctggctcaattggagactggaaagggtgatgat
gagagcgcccagcaatctgaagcgccccgtaagcgccacaaggccgaagcggcaggcagc
gggcaagcggccggcaacaggcagatgctgcagcttgaagagttggtgtttgccgctgga
gctcacttcatggccaataagaggtgtcagctaccagctggatccttcaggaaacagaga
aaaggttacgaagaagtgcacgtgccagccctgaagcccacggcttttaaaccgggcgaa
accttgaagccggtcgaggagctcccgaaatacgtgcaaccagcgtttgaagggttcaag
actttaaacagaatacagagccgcatatccgcagcagcgctcgatgaagactttaatctc
ctagtttgtgcgccaactggcgccggcaagactaatgtcgctctactgtgtatccttcgt
gaagtcggcaaacacgtcaacgctgacgggacagtcaacgcgtccgacttcaagatgatc
tatgtggcccctatgcgctctctagtacaggagatggtgggcaacttcagcaaacgttta
gcgccctacaacttgaaggtgtcagaattaaccggcgaccaccagctgaccagggaacaa
attgaggctactcagcttatcgtctgcacgccagaaaagtgggacatcatcactagaaaa
ggtggtgagcgttctttcacgaatctggtgcggctgatcataatcgatgaagtgcatcta
cttcacgacgaacgaggaccagtgctggaggcgctggtcgccaggaccttgaggacggtc
gagcagactcaagagccggtccgattggtgggtctgtcagctacactgccgaactatagg
gatgtcgccgacttccttagagtgaatcctgaccaagggctgttctacttcgacaattct
ttcaggcctgtagcgttggagcaacagtacatcggtgtgacagaaaagaaagccctgaag
cggttccaagtgatgaacgacatcgtttacgagaaaaccatggagcatgcagggaggaat
cagattctcgtgtttgtacattcgcgcaaggagacaggaaaaacagcgagggctattcga
gacatgtgcttagagaaggacacgcttggacaattcctcagggaaggctcagccagcaca
gaagtacttagaacagaagcggatcaagtaaagaaccctgaactacgagaactcctcccg
tatgggttcgcgatccatcacgccggtatgagccgcgtcgaccgtactttagtagaggat
ctgttcgccgacagacatattcaggtcctagtatcaactgccacccttgcctggggtgtc
aacttaccagcccacacggtcatagtgaaagggacccaggtgtactccccagaaaagggt
cgctggagcgagctcggtgccctcgacgtgttgcagatgttgggcagagctggccggccg
cagtatgatactaaaggagaaggtatcctgatcacaaaccactcggagctgcaatactac
ctgtccctactaaatcagcagctacccatcgagtctcaaatgataggcaaactgccggac
atgcttaacgcagaaatcgtgctgggctccgttcagagcgtccgcgacgccgttgcatgg
cttggttacacgtatctacaaattcgtatgaagcgtgagcccgcattatatggcatacca
cctgaaaagttacaagaagacaaatttttggagttgcacagagctgatctgatacacacc
gccgccagcttactagacaaagccggtttgatcaaatacgagcgcaaatccggccatttt
caacccaccgagctcggccgcatcgcctcccacttctactgcacttacgaaactatgcag
tcttacaaccaactactgaaaccaactttaggagagatcgagctgtttagagtgttctct
ctgtcggctgaattcaggaatataaccgttagagaagaagaaaaattggaattgcataag
ctgatggaaagggtaccaatcccaataaaggaaagtatagaggaaccgtcagccaaagtg
aatgtgctgctacaagcgtacatatcgcagttgaaactagaagggtttgctctaatggcg
gacatggtgtacgtcacgcagtcagctagtcgcctgctgcgggccatctttgagatagtg
ctgcacagagggtgggcccagctggtcgacaagacactggccctctgcaagatggtggac
cgtcgcatgtggcagtccatgtcaccgctacgacagttccgaaagatgcctgaggaggtg
ataaagaaactcgaaaagaagaatttcccttgggaaaaactgtacgagctcggccccaac
gagataggagagcttgttcgagcgccgaaactcgggaaaatgatacacaaatacgtccac
cagttcccgaaactagagctctctacacacatacagccgatcacgagaagcacgctgcga
gtgcagctcaccatcacgcctgatttccattgggatgaaaagatccacggtcaatcggag
gcgttctggatcctggtggaggatgtggactcggaggtggtgctgcaccacgagttcctg
ctgctcaaggagaagtactgcaaggacgaacatacggtaaaactgttcgtgcctgtgttc
gagcctctgccgccgcaatacttcctcagggtcgtttctgacagatggatagcagcagag
acacagctacccgtctcctttcaacatctaatcttgcccgagaagaatatgccacctacc
gagctgttggatcttcaaccgttgcctgtctctgctctacggaaccctaaatttgaggaa
ttatataaagagacgttcaaacagttcaacccagtacaaacacaggtgttcaacgcggtc
tacaacacggacgacaacgtgttcgtcggagcgccgtccggctccggcaagtccgtgatc
gcggagctggctttactgcggctgctgtcgagcaacgccgcgggcagagtcgtgtatctg
ctgcccaaggacgcgctggctgacattgtcttctctgattggtaccataagttcgccacc
cccgacggattcaacctaaaggtggtgcaactaactggcgagacagcgaccgaccacaag
ctgttaaacaggggacagatcatcataacaaccgctgagaaatgggacgtgctatcgcgc
agatggaaagtgcgaaagagtgtgcaatccgtgtccctattcattgtggatgccctgcaa
ctgctcggaggggacgaaggcccggtgttggaggtggtgtgctcccggatgcggtacata
tcctcgcagatcggtcgtcagatccgcatagtggctctgtcgctccctctagcggacgcg
cgcgacgtggcgcagtggctcggatgtaactccaacgccaccttcaacttccatcccagt
gtcagaccgttaccactagagctacacatacagggtttcaacatcccgcacgccgcgtcg
cggctgtcgtccatgacgaagcccatctacaacgccatcgcgcgccacgccggctcgcgg
cccgccgccgtgttcgtgccggcgcgccgggactcgcgcctgctggccgccgacctgctc
gcgctcgccgccgcgcaggggaggcctgccaggttcctgcatgccaatcaggacgagatg
cagaagtatctcgataaaatacaggataagatgttaaaggagacgctcggagccggcgtg
tcctacctgcacgagggcgtcgacccggacgaccggcgcgtggtgcagttcctggtgtcc
agcggcgccgtccagctgtgcgtggtggccgccgagctggcgtgggccttcgctgcccat
gtacacactgtgatagtgtgcgacacacacacttacaacggcaagctccatacatacgag
cagtacccgatcacgaccgtcctccacatgctgggccgcgcctgcccttcttcagaggat
gaccactccgtggctgtgctcatgtgccgcgcgcaccacaagaccttcttcaccaagcta
ctactggactgtctcccgctggagagtcacctggaccacagactgcacgaccacatgaac
gccgagatcgtgactaaaaccatagaaaacaagcaggatgccgtggactatctcacttgg
accttcctctaccgccggctcaccatgaacccaaattattacaacctgcagggtgttact
cacagacatttatcagaccacctctcggagctggtggagacgaccctgaccgacctggag
cagtctaagtgtatcgccatcgaggaagacatggacctgcaaccactcaacctgggcatg
atcgcttcctactactacatcaactataccaccatcgagctgttcagcttgtccctgact
agcaagactaagatccgaggtctgctggagatcatctcgtcagccgcggagtacacggag
ctctgcattaggcacagggaggagaacatcatcaaggcactggctaacaaagtcccacac
aagccgacttccacctcaggcaccgtcaagtacaacgacccgcacgtgaaagcgcacgta
ttacttcaagctcatctctcccgcactcaactaccgcaggagttacaacaggacacgcaa
ctagtgctcacaaaggcgatccgactgatccaagcgtgcgtggacgtggtctcgtccagc
ggctggctctccccagccgtggcggccatggagctggcccagatggtgacgcaggcgatg
tgggccaaggactcgtacctgcgccagctgccgcacttcagccccgaggtggtgcagcgg
tgcactgacaagggtgtagaaacagtgttcgacgtgatggagctggaggacgcggcgcgc
gccaagctgctgcaactgtcccccgccgagatggcggatgtggctcgcttctgtaaccgc
taccccaacgtggagctcgtctacgaggtgaaggaggagcggcggctgcgcgtgggcaag
cccatcgtggtggaggtggcgctggagcgcgaggacgacgtggtggggcccgtcatcgcg
ccattcttcccgcagaaacgcgaggaaggctggtgggtggtgatcggggcgccaaaaaca
aacagtctcctctccatcaagcgcgtatctctgggtaagagtgcgcgcgtccgcctggac
ttcgtgtgcggcgcggccggccggcacgcgtacactctctacttcatgtcggacgcgtat
ctcggcgccgatcaggagtacaagttccacgtggacgtggcagaagcggcggatgatgat
gatgatgattccgatgaatag
DBGET
integrated database retrieval system
