Cydia strobilella (spruce-seed moth): 134753938
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Entry
134753938 CDS
T10503
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cstb Cydia strobilella (spruce-seed moth)
Pathway
cstb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cstb00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
134753938
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cstb00536
]
134753938
Glycosaminoglycan binding proteins [BR:
cstb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134753938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_3
Laminin_G_2
Laminin_G_1
Herpes_gI
Motif
Other DBs
NCBI-GeneID:
134753938
NCBI-ProteinID:
XP_063545995
LinkDB
All DBs
Position
Z:52256508..52311768
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AA seq
1748 aa
AA seq
DB search
MALQMRGRLFFLLFCAFAVKGNDDVEVFDVLSTLREELPAGVSRVPGRCQGPAAAPYSAY
RLNENATILQQATGMFYNTFPEDFSILAVTRLPDRDQNTLFLLYSDAGDEQLQLVVGPMI
ELYYEDTRGDPPDHEMLTFRVDIADGRWHRVGLSIKGNSVTLLVDCEVRGTVALQRQPGS
TFNLAGVLVVGTQYSTDQYYDGDIELLQFTNKPDSAYDLCQSTAPNCQSDAPYVYVSAPA
INTVRTVAPNANEVYEESINYPVETTLDEDEHGPRVYGHFGRDRSDERNGSEEAWTTGRS
TPTPHWLAASYGYTNRPYPTSTDSDENSIFGTFTKEVDAVIRPNILDPDKTGQHLEVTTP
RLKRGDDDGADVLTTDSSYTPMTTTEDTDWLTHPPDVQGNASYYLPDYDYTYMGPRGYPG
PPGPQGPRGPNGEPGKPGAEGQQGFPGVPGHVFVIPLHQSGNDKGPDAQSEALRQMLTQH
MASMRGADGPMGLTGPPGPEGEYGAEGPKGEQGDQGEPGPPGPRGLQGPPGRPGRRGHAG
RDGERGSTGAAGAKGEPGYPGLMGLPGDKGERGAPGQQGESGAPGQEGPPGDDGPAGPPG
LSGEIGPRGLMGIRGFPGLIGYPGIPGIEGPQGPKGSAGQPGPPGQQGQPGPMGATGSPG
PQGPTGAPGIQGAQGKPGISGLPGPEGSPGTPGNPGQQGPQGEQGPQGPQGMLGFPGSRG
LKGDDGPRGPPGDKGDKGVRGLEGEKGDIGPKGERGFIGEPGPPGIEGVEGQKGMEGPRG
ETGSIGPTGEKGATGTLGPMGYPGPQGEKGDKGASGRRGRRGAKGLMGMVGNAGDRGEGG
PRGYRGPRGRRGSDGPPGSKGDTGQPGPPGPIGERGPQGLDGVRGFPGAIGPPGVDGKPG
LLGPPGERGPTGDPGPSGPPGPLGPVGPQGSVGEPGPLGPQGSSGIPGTPGEVGTPGDMG
KDGPPGPPGPEGKAGPVGSQGPHGRQGDTGLPGTPGTPGHKGDIGPPGLPGIRGEKGEQG
ETGHDGPIGPQGREGQRGSPGPGGQKGEIGEPGPPGAIGRDGPPGPRGFGGSPGPVGAPG
EDGDKGEAGPPGEKGFKGAAGEPGPQGSPGIQGLRGESGSVGLPGEKGPQGESGPPGTPG
ADGVRGPSGPQGPAGLQGDKGHQGFKGDRGDIGPKGPTGPPGPIGLQGQRGSKGVPGEPG
SRGAEGQRGEVGNPGAHGPSGPPGPEGKLGPRGLAGPKGDDGPVGVQGETGPKGPMGPEG
PKGDTGPAGFPGERGEPGEQGIKGEVGADGPEGSPGPPGPPGPIGLVGKPGEIGLPGKPG
AEGKAGAQGSPGVPGDKGDRGLPGLSGETGPAGPPGPPGEEGQRGMRGLPGPNGEVGAPG
TTGPEGPAGKTGPPGPQGPRGEKGNTGPKGHMGDTGRMGLKGDQGDVGKKGPPGPTGPLG
PKGDTGPEGPQGAKGEPGLVGPVGPEGPLGPKGSPGPEGRPGQPGPPGSPGPPGPPAPPP
QLPAELFVSSRRRRSIKDDESTTDADIEDEDIDWAKEIMNGVLAARTALDAARRPRGSRG
NPALSCRDLRVTHPNSTDGYYWIDARGGSHPVRVYCRGFYTCLYPDAKEPATYNAYGSAQ
KFSQLDHGYRITYEGEGTASIQLRFLRLLSSGARQNFTYTCVNTRIEQRSDIPADLTQIN
NIKLIGQNSFEFREPIFLKDECKTGKGEVVLEIKTSRMDRLPITDFLPRMFTDAEHDFSF
APGPVCFK
NT seq
5247 nt
NT seq
+upstream
nt +downstream
nt
atggctctacagatgagaggacgactcttctttttattgttttgcgcattcgcggtaaaa
gggaatgatgatgtagaagtattcgacgtgctgtcgacgctccgcgaggagctgccggca
ggcgtgtcgcgggtgcccgggcgctgccagggccccgcggcggccccgtactccgcctac
cggctcaacgagaacgctaccatactgcagcaagccactggcatgttctacaacaccttt
cctgaagacttctccatattagccgtgaccaggctacctgacagggatcaaaacacccta
ttcctgctgtactctgacgcgggtgacgaacaactccagctggtggtcggccccatgatc
gagctgtactacgaggacaccagaggcgaccctccggaccatgagatgcttacgttccgt
gtagacatcgcggatggaagatggcatcgagtaggtttaagtataaagggcaactcggtt
acactgctagtggactgcgaagtaaggggcacggtcgcccttcagcgtcagccgggcagc
accttcaacctggcgggcgtactggtagttggcacccagtactccacggatcagtactat
gacggcgatattgagttattgcaatttaccaacaagccagactcagcgtacgatctgtgc
cagtcgactgcacccaattgccaaagcgatgctccatacgtgtacgtctccgcgcccgca
atcaatactgtcagaaccgtcgctcccaacgccaatgaagtatacgaagaatcgattaat
tacccagttgagaccacactggatgaggacgagcatggtcctagagtgtatggacacttc
ggaagggatagatcggacgagaggaacggttcagaggaggcttggacgacaggcaggagc
acaccgacacctcattggttggctgcatcttacggttacactaataggccgtatccaaca
tcaacggattcagatgaaaacagtatttttgggacattcaccaaagaggtagacgccgtt
attcgtccgaatattctcgatccggataagacagggcagcatctagaagtgacaacacct
aggttaaagcggggagacgacgacggagcggatgtgctcacgacggactcctcgtacaca
cctatgacgaccaccgaggacacagattggctcacccaccccccggatgtccaaggaaac
gcttcctactacttgccagattacgactacacttacatgggcccgcggggttacccgggc
cccccggggccacaggggccaagagggcctaatggggaaccgggtaaaccaggagcggag
ggccagcagggtttccctggcgtgccgggtcacgtttttgttataccgctgcaccaatct
ggtaacgataaaggtcccgatgcacagtcggaagctttgcgtcaaatgctcacacaacat
atggcatccatgcgaggcgctgacggccctatggggctcactggtcccccggggcctgaa
ggcgagtacggcgccgagggcccgaaaggagaacaaggcgatcagggtgaaccggggcca
cccggacccagaggccttcaaggaccaccaggcagaccaggtcgccgcgggcacgcgggc
agggacggggagagaggatccacgggcgcggcgggcgctaaaggcgaacccgggtatccg
gggctgatgggactgccaggggacaaaggagagcgaggcgccccgggacagcagggcgaa
tcgggagcgccggggcaagaggggccgcccggggatgacggaccagcaggaccacctggc
ttaagtggagaaattggtccaagaggcttaatgggtataagaggttttcccggattgatc
ggctatcccgggattccggggatagaaggaccgcaaggcccaaaaggctccgccggtcaa
cctggacctcctggtcaacaaggtcagcctggccctatgggtgctacggggtcacccgga
ccccaaggacctactggagctccagggatacagggtgcacaaggaaaacctggtatttcc
ggcctcccagggcctgaaggttcgccaggtacgccgggcaacccagggcaacagggtcct
caaggagagcaaggaccgcaaggaccacagggcatgttaggttttccgggcagtcggggc
ttaaaaggagacgacggtccgcgtgggccacctggagataagggtgataaaggagttaga
ggtttggaaggagaaaagggagatataggtccaaaaggagaacgagggtttatcggagaa
ccaggtccaccgggcattgaaggagttgagggccaaaagggtatggaaggcccgagagga
gaaacaggttcgattggtccaactggtgagaaaggtgccaccggtaccctaggccccatg
gggtatcccggtccacagggtgaaaagggcgacaagggggcttctggaagacgaggccgt
cgaggggccaaaggtctcatgggtatggtgggaaacgcaggcgatcgtggtgagggcggt
ccaagaggatatcgtggtccacgaggccgacgcggttccgacggtccaccagggtcgaag
ggtgacactggccagccgggtcccccgggccccataggcgaacggggtcctcaggggctg
gatggcgtccgcggtttccctggtgcgatcgggcctcccggcgtagacggcaagcccggg
ctcctggggcctccaggggaacgcggtccaacgggtgatccaggcccgtcgggaccacca
ggtcccctaggccccgtagggccgcaaggatccgttggtgagccgggccccctggggcca
caaggatcgtcaggcatacccggcactcccggagaagtcggcaccccaggtgacatgggc
aaagatggaccaccaggcccacccggacccgaagggaaggcgggacccgttggatcacaa
gggccacatggtcgccaaggggacacgggattacctggaacgccgggaactccgggccac
aaaggagatataggtccccctggactccccgggatacgaggagaaaagggcgagcagggt
gaaaccggtcacgacggccccataggaccgcagggacgagaaggtcaaagggggtctccg
ggacctgggggccaaaagggagagatcggcgaaccaggaccaccaggtgcaatcggcaga
gacggtccacccggaccgcgaggcttcggcggctcgccgggaccagtcggggccccgggc
gaagacggcgacaaaggcgaagcgggacctcccggcgaaaaaggatttaaaggcgccgct
ggcgaaccgggaccccaaggttccccaggtatacaaggtttacgcggggaatccgggtct
gtgggtttacctggcgaaaaggggccgcagggtgaatcagggccgcctggaacccccggt
gcggatggagtgcggggaccttcaggcccccaaggccctgccggtcttcaaggggataaa
ggacaccaaggattcaaaggcgataggggagatattggacctaaaggacctaccggacct
ccgggtccgattggtttgcaaggacagcgtggctccaaaggtgtaccgggtgaaccggga
tctcggggtgctgaggggcaacgtggagaagtcgggaacccaggtgcccatggaccgtcg
ggaccacctggccctgaaggaaaactgggtcccagaggcctcgctggaccaaagggagac
gatggtccggtaggagttcaaggagaaacaggaccaaaaggcccaatgggccctgagggc
ccgaaaggagacaccggcccggcaggcttcccgggtgaaagaggcgagccgggcgaacaa
ggcatcaagggcgaagtaggggccgacggtcctgaaggcagccctggccccccaggccct
cctggacctattggactcgtaggaaaaccaggagaaattggcttaccaggcaaaccaggc
gcagaaggcaaagctggcgcccagggtagcccgggagttccaggcgataaaggtgatcgc
gggcttcccgggctgtcgggagaaacgggaccagccggtccccccggtcccccaggagaa
gagggccagcgtggtatgcgggggttaccaggacctaacggtgaagtaggagcaccggga
actaccgggccggaaggcccagcagggaagaccggaccgccaggaccccaagggccacgt
ggagagaagggaaacacggggcctaagggccacatgggcgacaccgggcggatgggcttg
aagggcgatcagggcgacgtcgggaagaaaggaccgcccggaccaactgggcctttggga
cctaagggagacacgggtcccgaaggtccgcaaggagcaaaaggcgaaccaggactagta
ggtcctgtaggtccagaagggcctctgggtcccaaaggttcgccgggccctgaaggcagg
ccggggcagcccgggccgccggggtcgccgggtccgcccggcccgccggcgcccccgccg
cagctgcccgctgaactgttcgtgtcgtcgcgacgtagacgcagcatcaaggatgatgag
tcgaccacagatgccgatattgaagacgaagacatcgactgggccaaagagataatgaac
ggcgtgctggccgcgcgcacggcgctggatgcggcgcggcggccgcgcggctcgcggggc
aaccccgcgctcagttgcagggacttgcgggtcacacatcctaactccactgacggatat
tactggatcgacgcgcgcggcggcagtcatccggtgcgcgtgtactgcaggggtttctac
acctgcctgtatcccgacgccaaagaacccgccacgtacaacgcttacggatctgcgcaa
aagttttcacaactcgaccacgggtaccggataacgtacgagggagagggtactgcctct
atacaactgagattcctgagacttctatccagcggagcgagacaaaactttacatacacg
tgcgttaataccaggattgaacaaagatcggacattcccgcagacttgacacaaattaac
aatattaaactgattggtcaaaactcatttgaattcagagaaccaatatttcttaaggac
gagtgtaagactggcaagggcgaagtagtattagaaatcaagacttctcggatggaccgg
ctgcccataacggatttcctaccgcgaatgttcacggacgccgagcacgacttctcgttc
gccccggggccggtctgcttcaagtag
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integrated database retrieval system
