Cydia strobilella (spruce-seed moth): 134755725
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Entry
134755725 CDS
T10503
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
cstb Cydia strobilella (spruce-seed moth)
Pathway
cstb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cstb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
134755725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cstb03400
]
134755725
DNA repair and recombination proteins [BR:
cstb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
134755725
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
134755725
NCBI-ProteinID:
XP_063548342
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Position
1:complement(6697549..6727203)
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AA seq
1123 aa
AA seq
DB search
MSKRNSVGPSNTLFNYFTKTPPANKKAKPVQNGDGTPDLDSLKKEIEVKIENKKRERQVT
PSPEVKEEVHSDGDEPIAPKKRKRIRLNPVDSDDSDTENKVDNIIETPKEKTALGKKLND
SFKYEAIQTPKGTSKSSKKPAATNGPAIPPKTETADELPVNDDGNWVHCKLDWLRPDKIR
DANKRKPDHPDYDPSTLFVPTEFMNNQTPAHRQWWQMKTSHYDCVLFFKVGKFYELYHMD
AAVGVNELGFSYMKGDFAHSGFPESAYARMANTLVSKGYKVARVEQTETPDMMQDRCKKL
GQTSKFDKVVRREICQVTLRGAHAAGLQDPGPAEPGADYMLCVAEEESNGISTYGVCFVD
ASIGLFHLGQFKDDKHSSRLLTTLAHFPPALIVYDRRSTTARTSKLLGTHCHRARREPQV
LWPPEKTLKTLAENYYKTNADGDWPEGLKPFLHEGDALGLTPAPNCYLAIKALGGCVSYL
SQCLLDIQVLGMSQFESFVPPDVLNKTLSQELKVENKWEGGSTMVLDAITLRNLRIVQDE
GCLYDKLNFCATAMGKRLLYQWVCAPSCNLAVIKERQEAVKELFENQELSQDAKNILTTL
PDLERLLAKVHTLGNLKRSTSHPDSRAIFYEEKTYSKRKVLDFIAVLNGFQSALKLVELF
DDAESGMLKKLTKFSPHGKFPDYRDTLKFFKEGFNQSEAEKEGRILPGAGVDPEYDNTLQ
LIDNIQKELKEYLAEQEKYFKCRLKYVGTDKKRYQIEVPESATKRATSDYHMEGARKGFK
RFSTSETKDLLARMTAAEDQKRDVLKDLSRRMFEKFSSNHAYWDAAVQCVAVLDILLALA
EFARQQSGDVCLPSVTFDPEQKPFINIVDGRHPCIPVAEFIPNDTNLGGEAALLLLTGPN
MGGKSTLMRQMGLLTVLAHLGSYVPASEYSLSVVDRVFTRLGAADDILSGQSTFLVEMNE
TAAIVKHATVHSLVLLDELGRGTSTYDGTAIASGVCVELAERGCRVVFSTHYHSLVHHLA
SHPGVVLGHMACMVETDESTADSDDHIPEETITFLYKLSPGACPKSYGFNAARLAGVPRE
ITRRAHQISKNLEKEATCVRAFRDIVKLDDGKQIRELLAALSI
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacgcaacagcgttggaccttcaaataccctatttaactattttactaaaaca
ccgcccgccaacaagaaggcgaaacccgtacaaaatggagacggaactccagacctcgac
tcattaaaaaaagaaatagaagttaaaattgagaataagaaacgcgagaggcaagtcact
ccctctccagaagtgaaggaggaagtacacagtgatggtgacgaacctatcgctcctaag
aaacggaagaggatcagattgaatcctgtggattccgatgattctgatacggaaaataaa
gtagataacataattgagaccccaaaggagaagacagcactagggaaaaaactgaatgat
agttttaagtatgaggcgatccagacaccaaagggcaccagcaagagctcaaagaaacca
gctgcaactaatgggccagccataccaccaaaaactgagacagcagacgagttgccggtc
aacgacgatggcaactgggtgcactgcaaactggactggctccggcctgacaagattcgc
gacgccaacaagaggaagccagatcatccggactatgatccttccactctctttgtgcca
acggagttcatgaataatcagactcctgctcatcgtcaatggtggcagatgaaaacatct
cattacgattgcgttcttttcttcaaagtcggcaagttctacgaattgtaccacatggac
gccgcggtcggggtcaacgaactcggattctcatacatgaagggtgatttcgctcactcc
ggtttcccggagagcgcgtacgctagaatggccaatacgctggtgtctaaagggtataaa
gtagctcgagttgagcaaacggagacgcctgatatgatgcaggataggtgcaagaaactg
ggtcaaacctcaaagttcgacaaggtggtgcgtcgagaaatatgccaagtgacgctacgt
ggcgcgcatgcggccggtctgcaagacccgggcccggccgagcctggcgcggattacatg
ctgtgtgtagccgaggaggaaagcaacgggatcagcacatatggcgtgtgcttcgtcgac
gcttcaatagggttgttccatctgggacaattcaaggacgacaagcattcctcaagactt
cttactactctggcgcattttccgcccgcactaatcgtatacgaccgtagatccaccaca
gcgcgtacatcaaagttactcggcacacattgccaccgcgcacgacgcgaacctcaagta
ttatggccaccggagaagactcttaaaacgcttgcggaaaactactacaagaccaacgcc
gatggggattggccggagggattgaagcctttcctgcatgaaggtgacgccttaggttta
actccagccccaaattgctacctagcgatcaaagccctaggcggctgcgtgtcctacctc
tcccaatgcctcctcgacatacaagtactaggcatgtcgcagttcgagtccttcgtgccg
cccgacgtgctaaacaagaccttatcgcaagagctcaaggtcgagaataagtgggaaggc
ggcagtaccatggtgttggatgctatcacgttgaggaatttgaggatagtacaggatgag
gggtgtttgtatgacaagttgaatttttgtgccactgctatgggtaaaagattgttatac
cagtgggtatgtgcgccaagctgcaatttagccgttataaaggaacgccaggaggctgtc
aaggagttattcgagaaccaagagctgagtcaagatgcgaagaatatacttactacattg
ccagatttggaacggcttttggcgaaagtgcacaccctcggcaacttgaagcgctcgaca
tcgcaccccgactcacgcgccatcttctacgaagagaagacctactccaaacgaaaagtc
ctcgacttcatcgccgtgctcaatggattccagtctgcactgaaacttgttgagttattt
gatgacgcagaaagcggaatgttgaagaaattaacgaagtttagtccgcatggaaagttt
ccggattatagggacacgttgaagttttttaaggaaggattcaaccaatccgaagccgag
aaagaaggtcgcatcctgcccggcgcgggcgtcgaccccgagtatgacaacacactgcaa
cttattgacaatatacagaaagagctcaaggagtatctggctgaacaggagaaatacttc
aagtgtcggttgaagtacgtgggaaccgacaagaagcgttatcagatagaggtaccagaa
agcgctacgaaaagggcaacttctgactaccacatggaaggtgcccgaaaagggttcaag
agattctctaccagtgaaactaaggacctcctagcccgtatgacggcagccgaagatcaa
aagcgcgacgtcctgaaagacctgagtcgtcgaatgttcgagaaattctccagcaaccac
gcgtactgggacgccgccgtgcagtgtgttgcggttttggacatactactggctttagca
gagtttgcgaggcagcagagcggggatgtttgtctgccgagtgttactttcgacccggag
caaaagcccttcataaacatagtagacgggcggcacccgtgcatacccgtcgcggagttc
atccccaacgacacgaatctgggcggagaagccgcgctacttctgctgacgggtcccaac
atgggtggcaagtctacactcatgcggcagatgggtctactcactgttttggcgcatttg
ggttcatacgtcccagcgtcagaatacagcctaagcgtagtggaccgcgtgttcacacgg
ctcggcgcggccgacgatatcctgtcggggcagtccacgttcctcgtggaaatgaacgaa
acagcagctattgtcaagcacgccaccgtgcattctttggtgctgttggatgaacttggc
cgcggcacgtcgacctacgacgggacagcgatagcgtcgggcgtgtgcgtggagctagcc
gagcgcgggtgccgcgtggtgttttctacgcactatcactcgctcgtgcatcatctggcg
tcgcatcctggagttgtgttaggacatatggcgtgcatggtggaaacggacgagtccaca
gcggacagcgacgaccacatccccgaggagaccatcacgttcctgtacaagttgtccccc
ggcgcgtgtcccaagtcgtacggcttcaacgccgcgcgcctcgccggcgtaccccgcgag
atcacacgcagggcgcaccagatatccaagaacctcgagaaagaggcgacgtgtgtgcgc
gcttttagggatattgtgaagttggacgatggtaaacagattagggagctgctagcggct
ttgagtatttaa
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