Cydia strobilella (spruce-seed moth): 134755752
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Entry
134755752 CDS
T10503
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cstb Cydia strobilella (spruce-seed moth)
Pathway
cstb03018
RNA degradation
Brite
Enzymes [BR:
cstb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134755752
Messenger RNA biogenesis [BR:
cstb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
134755752
Spliceosome [BR:
cstb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
134755752
Complex C
U4/U6.U5 tri-SnRNP related factors
134755752
Ribosome biogenesis [BR:
cstb03009
]
Eukaryotic type
Pre-60S particles
Helicases
134755752
Transfer RNA biogenesis [BR:
cstb03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
134755752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
134755752
NCBI-ProteinID:
XP_063548389
LinkDB
All DBs
Position
3:complement(7208417..7220790)
Genome browser
AA seq
1032 aa
AA seq
DB search
MADINSLFDCFDEPAQNAASIQLPNVKNEEEISETTEEKSVINNKRAHDEVEYADTSKRL
KQDEDEGDLTSDLNLEALHSRIVIHTLETHEGCTHEVAVPPNQEFVPHAQPTSEPAKQYS
FILDPFQKEAILCIDNLESVLVSAHTSAGKTVVAEYAIAVSLKNKQRVIYTTPIKALSNQ
KYREFSEEFHDVGLITGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYM
RDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHSQPCHVVYTEYRPTPLQ
HYIFPAGGDGIHLVVDEKGQFKEDNFNTAMTVLGNAGDAGKGDQKGRRGGPRGGPNTNIF
NIVKMIMERNFAPVIVFSFSKKDCEAYAMQMAKLDFNTLEEKKLVDEVFNNAMDVLSEED
RKLPQVENVIPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATETFAMGLNMPART
VVFTSCQKFDGKEMRFLTSGEYIQMSGRAGRRGLDDKGIVILMIDQKVTPSVVKDMVQGK
ADPINSAFHLTYNMVLNLLRVEDINPEYMLERSFFQFQNQAAIPDLIDKVKMKQKEYNSV
TVEQEHSIASYCNIRSQLDMLGSQFRSVITRPEYLKPFLQPGRLVKVKTEKYEYDWGIIV
NFRHKTQGKGKKGKGDDNPLSSEAVIVVDILLHVKQASGDDAETNVPCPPGETGDIEVVP
VLHTLIHQISSLRVYYPKDLRPADSRKSVLKTIGEVKKRFPEGPPLLNPIKDMKIDDPVF
KECVERIKQLEERLYAHSLHTDKNRAALQAAHERKLEIYEELTQAKTELRKAKSILQMDE
LKKRKRVLRRLGYCTAADVIELKGRIACELSSADELLLTELIFNGVFNALTSSQSAALVS
CFVCDENSSQSSATGEELRGVLRQLQEYARRIAKVSIEAKMDLDEDNYVGKFKCTLMDVV
HSWSKGASFLEICKMTDVFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSEAIKLL
KRDIVFAASLYM
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atggctgatataaacagtttgtttgattgctttgatgagccagctcaaaatgcagcgtca
attcaattgccaaacgttaaaaatgaagaagaaatttcggagactacagaagaaaaaagt
gtaataaataataaacgagctcatgatgaagttgaatatgccgatacgtcaaagaggctc
aaacaagacgaagacgagggtgatctgacttcagatttaaacttagaggcacttcactcg
cgcatagtcattcatacgttagaaactcacgaaggttgcacacatgaagtggcagtacca
ccaaatcaggagtttgtgccacatgcgcaacccacttcagagcccgccaagcagtactct
ttcatactggatcccttccagaaagaagctattttgtgtatagacaatttagagtcagtg
cttgtgtcagctcacacttctgcaggaaaaactgttgtggctgagtatgccatagctgta
tcactaaagaataagcagagggtaatctacacaacacctattaaagctctctccaaccag
aagtaccgggagttttctgaagagttccatgatgtaggcctaataaccggtgatgttact
attaacccttcagcttcttgcttgattatgactactgagattctcagaaacatgttatac
aggggatcagaaatcatgcgtgaagttggatgggttgtatttgatgaaatccattacatg
agagacaaggaaagaggtgttgtgtgggaagaaacactgatattgctacccgacaacgtc
cactacgtgttcctgtctgctaccattccgaacgcgcggcaattcgccgagtgggtctgc
cgcctgcactcgcagccgtgccacgtggtgtacacggagtaccggcccacgccactgcag
cactacatcttccctgcgggcggcgacgggatacacctggtggtggatgagaagggacaa
tttaaagaagacaacttcaacacagcgatgacagtcctcggaaacgcgggcgacgctggc
aagggcgatcaaaaggggcgccgcggcggcccgcgcgggggccccaatactaatatattc
aatatagtcaagatgatcatggaacggaacttcgcccctgttatcgtgttcagtttcagc
aagaaagactgcgaggcgtatgccatgcagatggccaagttagacttcaatacacttgaa
gagaagaaactagtagatgaagttttcaacaacgcgatggacgtgctatctgaagaggac
cgcaaactgccgcaggtggaaaatgtaatcccacttctaagacgcggcattggtatacat
catggtggcctcctgcccatacttaaggagactattgagatattgtttggcttgggactt
attaaggccctgtttgccacggagaccttcgccatgggactcaacatgccggcgagaact
gttgtcttcacctcatgtcagaaattcgacggaaaagaaatgagattcctaacatcgggc
gagtacattcaaatgtccggaagagctggtcgtcgaggcttggacgacaagggtattgtg
atcctcatgatcgatcagaaagttacacccagcgtggttaaagacatggtgcagggcaag
gctgatcctatcaattcagccttccatctcacttataatatggtattgaacttgttgaga
gttgaggatatcaatccggagtatatgttagagagaagcttcttccagttccaaaatcaa
gctgctattcctgatttaattgacaaggttaaaatgaaacagaaagagtacaactcagtg
acggtggagcaagagcactcgatagcatcgtactgtaatatcaggtcgcagttggacatg
ctcggttcgcagttccggtcggtcatcacacgtcccgaatatcttaagccttttctacag
cctgggagacttgttaaggtgaaaaccgagaaatacgagtacgactggggcatcatagtg
aacttcaggcataaaacgcaaggcaagggcaagaagggcaagggggacgacaacccgctt
tcgtctgaggctgtgatcgtggtcgacatactgctgcacgtcaagcaggcgagcggcgac
gacgcagagaccaatgtgccgtgcccgcccggcgaaaccggagacatcgaggtagtacca
gtactccacaccctcatccaccaaatcagctccctccgcgtgtactacccaaaggaccta
cggcccgctgacagtcgcaagtccgtactcaagactattggagaagtgaagaaacggttc
cctgaagggccaccgctgcttaatcctattaaggacatgaagattgacgatccagtgttt
aaagaatgcgtggagagaattaagcagttggaagaaagactttacgctcactccctccac
acggacaagaaccgcgccgcgctgcaagcggcccacgaacgcaagctggaaatttatgaa
gagctcacccaggccaagaccgagctgcggaaggccaagagcatcctacagatggacgag
ctcaagaagaggaaacgagtgctgcggagactgggttattgcacggcagctgatgtcata
gaactgaaggggaggatcgcctgtgaattgagcagcgcggacgaactcctcctaaccgaa
ctgatcttcaacggcgtattcaacgcgctcacatcctcgcagagcgccgcgctcgtcagc
tgcttcgtgtgcgacgagaacagctcgcagtcctccgccaccggcgaggagctgcgcggc
gtgctgagacagctacaggaatacgcccggcggatagctaaggtgtcgatcgaagccaag
atggacctggacgaagataactacgttggcaagttcaagtgcacgctgatggacgtcgtg
cactcctggtctaagggcgccagctttctggagatctgcaaaatgacagacgtttttgaa
ggttccataataagatgcatgcggcggctagaagaagtgctccgtcaactctgccaagcg
gccaagaacattggcaatactgacttggagaacaaattcagtgaagccatcaaattgctc
aagagagacatcgtctttgccgccagcttgtacatgtaa
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integrated database retrieval system
