Cydia strobilella (spruce-seed moth): 134756012
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Entry
134756012 CDS
T10503
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
cstb Cydia strobilella (spruce-seed moth)
Pathway
cstb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cstb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134756012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cstb03019
]
134756012
Messenger RNA biogenesis [BR:
cstb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
134756012
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
134756012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
134756012
NCBI-ProteinID:
XP_063548853
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All DBs
Position
3:16468998..16472637
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AA seq
307 aa
AA seq
DB search
MANLLLSPSEKVFILHGVQDDYRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILV
GVKTEIDVPKPDKPNMGKIEFFVDCSANATPEFEGRGGEQLANSIANLMQRAYHSSQAFD
LKQLSILEGKQCWKLYIDVLILESGGNLCDAVSLAVKAALFNTRIPLVKAALMDGGNVDL
QLSDDPYDSKLLNVGSAPLLVTLCKIGDKCVVDPSAEEESCSVISLLVGVSGNRRHYSTE
ALEAPKGGKCTTIAMNGPGSVAPKTLKDAINQGIIAAKSLDEALGDALLRERKETIGLKK
HSYGFLK
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atggctaacttattattaagtccttcggaaaaagtatttattcttcacggcgtacaagat
gattaccgttcagatggccgatcaaacatagattacaggcctatggagttagaaaccgat
gtagtcagccatgcaagtggatcagccaggcttcgcttagcaaatacagatatacttgtt
ggtgtgaaaacagaaattgatgtaccaaaacctgacaaaccaaacatgggaaagatagaa
ttctttgtagattgctctgcaaatgcaaccccagaatttgaaggtaggggaggcgaacag
cttgctaacagcatagcaaacctcatgcagcgagcctatcactcctcacaagcatttgat
ctcaagcaactgtccatcttagagggaaaacagtgttggaagctgtacattgatgttttg
attcttgaaagtggtggcaacctgtgcgatgcagtttccttagccgtcaaagcggcgttg
ttcaacaccaggattcctctcgtaaaggcagcattgatggacggaggaaatgtagacttg
cagctgtctgacgatccctatgatagtaaactcttaaatgttggaagtgcaccactcttg
gtaaccttatgcaaaatcggagacaaatgcgttgtagacccgtcagccgaagaagaaagc
tgcagcgttatctccctcttagttggagtctcgggtaaccgccgacactacagcacggaa
gccctggaggctcctaaaggcggcaagtgcaccacaatagctatgaacggcccgggcagc
gtggcgccgaagacgctcaaggatgccatcaaccaaggaataattgctgccaaatctcta
gatgaagctttaggagacgcgcttctacgagagcgaaaggaaactatcggcctaaaaaag
cattcctatggatttctcaaataa
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