Collinsella stercoris: LK434_03740
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Entry
LK434_03740 CDS
T07953
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cstc
Collinsella stercoris
Pathway
cstc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cstc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK434_03740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cstc03019
]
LK434_03740
03016 Transfer RNA biogenesis [BR:
cstc03016
]
LK434_03740
Enzymes [BR:
cstc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LK434_03740
Messenger RNA biogenesis [BR:
cstc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LK434_03740
Transfer RNA biogenesis [BR:
cstc03016
]
Prokaryotic type
tRNA degradation factors
LK434_03740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_RRP5
KH-I_KHDC4-BBP
KH_2
FlgM
GldM_4th
Motif
Other DBs
NCBI-ProteinID:
UEA46219
LinkDB
All DBs
Position
complement(865118..867409)
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AA seq
763 aa
AA seq
DB search
MTLVSKTFDLFGKTYVLEAGELAKQATGAALVKQGDSTVLTTVVVSKERKNYDFFPLTVD
FNEKMYAAGRIPGGYLKREGRPSEKATLTARMIDRPIRPSFPDGFRNEVQVVATSLVADQ
KNPVDVICVMGASLAMTLGGVPFEGPLACVRIGRDKETGEFIVNPTYEERDASDLDLELA
GTRDFISMVEAGAEEVSEEDMLAAMQFGQEAIGAFCDAQLEFVAEWEQVNGAIVKREYPL
DEPNEEVHDRIFAHYDEMAAALRDADKLARQDKVAELKEAIKAEFTEEEQAAWEREIPVN
LKKLEKTAMRRMVVETGERVDGRAANEIRPIMVKGDYLPLVHGSGLFQRGQTQVLSVLSL
GMLNEGQRLDTIEPVEGKRYMHHYNFPPYCTGETGRMGSPKRREIGHGNLAERALIPVLP
DENEFPYAIRVVSEVMESNGSSSMASTCGSCLALMDGGVPIKRPVSGIAMGLIQEEGKTV
VLSDIQGLEDFLGDMDFKVTGTERGITALQMDNKATGLTFDILRTALEQAKEGRAFILDK
MLEVVPGPREDTRATAPKIQSITIPTENIRDVIGKGGETIRGIQDETGASIDIHEDGTVY
VGGVGDSVAAAIERIELIVKVPEVGEEYTGRVVSIQPFGAFVNLLPGKDGLLHISRVAQG
RVEKVEDVLNVGDEVKVTVIEIDDRGKISLDRLDKPEAPAGSGSGEGRGGERRERGDRPG
RGARDTGARGFDRPARRERGDRPRHPGDNGGAGRAPRRHHEAE
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgacactcgtaagcaagacctttgacctgttcggcaagacctacgtgctcgaggccggc
gagcttgccaagcaggccacgggtgccgcgctcgtcaagcagggcgactccaccgtgctc
accacggtcgtcgtctccaaggagcgcaagaactacgacttcttcccgctgaccgtcgac
ttcaacgagaagatgtacgccgccggccgcatcccgggaggctacctcaagcgcgagggc
cgtccttccgagaaggccaccctcaccgcccgcatgatcgaccgtccgatccgcccgtcc
ttccccgacggcttccgcaacgaggtccaggtcgtcgccacctccctcgtggccgaccag
aagaaccccgtcgacgtgatctgcgtgatgggcgcatcccttgccatgacgctcggcggc
gtgccgttcgagggcccgctcgcctgcgtgcgcatcggccgcgacaaggagaccggcgag
ttcatcgtcaaccccacctatgaggagcgcgacgcctccgatctcgacctcgagctcgcg
ggcacccgagacttcatctccatggtggaggccggtgccgaggaggtctccgaggaggac
atgctcgccgccatgcagttcggccaggaggccatcggcgccttctgcgatgcccagctc
gagttcgtggccgagtgggagcaggtcaacggcgcgatcgtcaagcgcgagtacccgctc
gatgagccgaacgaggaggtccacgaccgcatcttcgcccactacgacgagatggccgcc
gccctgcgcgacgccgacaagctcgctcgccaggacaaggtcgccgagctcaaggaggcc
atcaaggccgagttcaccgaggaggagcaggccgcgtgggagcgcgagatcccggtgaac
ctcaagaagctcgagaagaccgccatgcgccgcatggtcgtcgagaccggcgagcgcgtc
gacggacgtgccgccaacgagatccgccctatcatggtcaagggcgactacctgcccctg
gttcacggctccggcctgttccagcgcggtcagacccaggtgctctccgtgctctcgctc
ggcatgctcaacgagggccagcgcctggacaccatcgagcccgtcgagggcaagcgctac
atgcaccactacaacttcccgccctactgcacgggtgagaccggtcgcatgggtagcccc
aagcgccgtgagatcggccatggcaacctcgccgagcgcgcgctgattcccgtgctgccc
gacgagaacgagttcccctacgccatccgcgtggtctccgaggtcatggagtccaacggc
tcctcgtccatggcgtccacctgcggcagctgcctggcgctcatggacggcggcgtgccc
atcaagcgccccgtgtccggcatcgccatgggcctcatccaggaggagggcaagaccgtg
gtcctgtccgacatccagggcctcgaggacttcctgggcgacatggacttcaaggtcacc
ggtaccgagcgcggtatcaccgccctgcagatggacaacaaggccaccggcctgacgttc
gacatcctgcgcactgcccttgagcaggccaaggagggccgtgcgttcattctcgacaag
atgctcgaggtcgtccccggcccgcgcgaggacacccgcgctaccgcgcccaagatccag
agcatcaccatcccgacggagaacatccgcgacgtcatcggcaagggcggcgagaccatc
cgcggcatccaggacgagaccggcgcctccatcgacatccacgaggatggcaccgtgtac
gtcggtggcgtgggcgattccgtcgccgccgccatcgagcgcatcgagctcatcgtcaag
gtgcccgaggtgggcgaggagtacaccggtcgcgtggtttccatccaacccttcggcgcg
ttcgtgaacctgctgcccggcaaggacggcctgctgcacatctcccgcgttgcccagggt
cgcgtggagaaggtcgaggacgtcctcaacgtgggcgatgaggtcaaggtcacggttatc
gagatcgacgaccgtggcaagatctccctcgatcgccttgacaagcccgaggccccggct
ggctccggttcgggcgagggtcgtggcggtgagcgtcgcgagcgtggtgaccgtccgggt
cgcggtgcccgtgacaccggtgcgcgcggtttcgaccgccctgcgcgccgtgagcgcggc
gaccgtccgcgtcaccccggcgacaacggcggtgctggtcgcgccccgcgccgccaccac
gaggcggagtaa
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