Collinsella stercoris: LK434_04155
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Entry
LK434_04155 CDS
T07953
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
cstc
Collinsella stercoris
Brite
KEGG Orthology (KO) [BR:
cstc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cstc03016
]
LK434_04155 (rnd)
Enzymes [BR:
cstc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
LK434_04155 (rnd)
Transfer RNA biogenesis [BR:
cstc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LK434_04155 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
UEA46297
LinkDB
All DBs
Position
complement(953141..954274)
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AA seq
377 aa
AA seq
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MYISTYDDLSAFCGRARCHVAIAIDTEFLRERTYHAKLCLVQVATPDECVVIDPLTIDDL
SPLAELMADVDTLKVFHACSQDMEVLVHTLGVCPAPIFDTQVAAGFLGERAQCSYHNLVH
SFCGVSLPKTESLTDWSRRPLSPQQIEYAVDDVRYLIDAYRVIESKLHSLGRTAWVRDEI
RPLADPAHYRSDPRSAFKRVKRINACTRRQLAVARELAAWREHRAEDRDIPRKWVMSDEV
LVALCRRVPKTIEDFRAVRGTEQLSARDVEVALDAIARGVRCPAENLPSIGRAHRTPAPE
LESVIDLMYALIRLVSDRSGVATSLIISRDGLLDYIDHPERSPLREGWRFELVGTLIDDL
LRGDIGLTVKDGALEIL
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgtacatctccacatatgatgacctatccgcgttttgcgggcgagcgcgctgccatgtc
gccatcgccatcgataccgagtttttgcgcgagcgcacgtaccacgccaaactctgcctg
gtgcaggtggcgacgcccgacgagtgcgtggtcatcgatcctttgaccatcgacgacctt
tcgcccttggccgagctcatggccgacgtcgatacgctcaaggtgttccatgcctgctcg
caggacatggaggtgctggtccatacgctcggcgtgtgccccgcgccgatcttcgacacg
caggtggccgcgggatttttgggcgagcgcgcgcagtgctcctatcacaatctggtccat
tccttttgcggcgtgtcgctgcccaagaccgagtccctcacggattggtcgcgccgcccg
ctgtcgccccagcagatcgagtatgcggtcgacgacgtccgctacctcatcgacgcgtac
cgggtgatcgagtccaagctgcactccctgggacgcaccgcgtgggtgcgcgatgagatc
aggcccctagccgatcccgcccactatcgcagcgatccccgctccgcgttcaagcgcgtc
aagcgtatcaacgcctgcacgcgccgtcagctcgccgtcgcccgcgagctcgccgcctgg
cgcgagcatcgcgccgaggaccgggacatcccccgcaagtgggtcatgtccgacgaggtg
ctggtggcgctgtgccggcgcgtccccaagaccatcgaggactttcgcgccgtgcgcggt
accgagcagctgagcgcgcgcgatgtcgaggtggcgctcgacgccatcgcacgcggcgtt
cgctgccccgccgagaacctgccctccatcggccgcgctcaccgcacgccggccccggag
ctcgagagcgtcatcgacctcatgtatgcgctcattcgcctcgtgtcggaccgctcgggc
gtcgcgacttcgctcatcatctcccgcgacgggctgctcgactacatcgatcaccccgag
cggagccccttgcgcgagggatggcgcttcgagctggtgggcacgctcatcgacgacttg
ctgcggggcgatatcggcctcacggtcaaggacggggctctggagattctctag
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