Collinsella stercoris: LK434_04450
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Entry
LK434_04450 CDS
T07953
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cstc
Collinsella stercoris
Pathway
cstc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cstc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK434_04450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cstc03019
]
LK434_04450
Enzymes [BR:
cstc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LK434_04450
Messenger RNA biogenesis [BR:
cstc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LK434_04450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Fe-ADH
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UEA46355
LinkDB
All DBs
Position
complement(1034824..1036953)
Genome browser
AA seq
709 aa
AA seq
DB search
MSSQNTMNDRAARENEVRGSRHADKTVYVESAVEPSAGSAAGDGPTFADLGLSDEVLAAV
ADMGYTSPTPVQAASIPHALDGEDVLAAAQTGTGKTAAFLLPTMNNLPHVPRGRARGRVA
AQGPLMLVVTPTRELAQQIEDVCRAIAKCTGHTSVTVVGGVSYNPQRDKLKRGCDILIAT
PGRLQDLIDQGACSLDQVQVLVLDEADRMLDMGFLPAVRRIVGYTRDDRQTLLFSATLDE
QAVGSITDLVHDPARVEIAPVTSTADTVEQYVLPVSLEAKNALLASVLKREGASRAIVFC
RTKHRADACSRRLARAGITCAAIHGDRSQAQRERALKAFRAGECDVLVATDVLARGIDIS
DVRYVVNFDVPEDPVDYIHRIGRTGRAGELGWSLTFVTPDDVAEFYDIEALMGKTADLFD
AEGLEVGSNAPQVDPDRVPAKAPAGRKEKKRRRKTKNKAKGGASRGEGGSARGDGGSSRA
KGGASRAEGSSGVSAANSTGSRANGPSGRFGAADGRVADGGASKPSRRKRGGKTRVRAEE
GGEVELLSAREVKRMEANPELKGAKRSGGSRSAGKAGLANGRRRDEGSDGSRRSDRSGRE
GASRPGRAEGSRSGREGVFRSGRSSRPGRDGGARPAERGGRHDDVRGSSSRGGRDAWRNY
DEPSDRRSRGGRSGRGGAGPRAGRDDRQAPRGGNPSRSTRRPGDRGGRR
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttctcaaaacaccatgaacgatcgcgccgcacgcgaaaatgaggtacgaggctcc
cgtcacgccgacaagactgtgtatgtcgagtctgccgtcgagccgtccgccgggtccgcg
gcaggcgacggcccgacctttgccgaccttggcctctccgacgaggtgctcgccgcggtg
gccgacatgggctacacctcgcccacgcccgtgcaggcagcctcgatcccgcacgccctc
gacggcgaggacgtgctcgccgccgcccagaccggcaccggcaagaccgcggcgttcctg
ctgcccaccatgaacaacctgccgcacgtgccccgcgggcgcgcgcgtggccgcgtcgcc
gcgcaaggccccctcatgctcgtcgtcacgcccacgcgcgaactcgcccagcagatcgag
gacgtgtgccgggccatcgccaagtgcaccggccacacgagcgtcaccgtggtgggcggc
gtgagctacaacccgcagcgcgacaagctcaagcgcggctgcgacatcctcatcgccacg
ccgggccgcctgcaggacctcatcgaccagggcgcctgctcgctcgaccaagtgcaggtc
ctcgtgctcgacgaggccgaccgcatgctcgacatgggctttttgcccgccgtgcgccgc
attgtgggctacacacgcgacgaccgccagaccctgctgttctccgcgaccctggacgag
caagccgtgggctccatcaccgatctggtgcacgaccccgcccgcgtggagatcgccccg
gtgacctccaccgccgacacggttgagcagtacgtgctccctgtttcgcttgaggccaag
aacgcgctgctcgcgagcgtgctcaagcgtgagggcgcctcccgcgccatcgtgttctgc
cgcaccaagcaccgtgccgatgcctgcagccgtcgcttggcgcgcgcgggcatcacctgc
gcggcgattcatggcgaccgcagccaggcccagcgcgagcgcgcgctcaaggcgtttcgc
gccggcgagtgcgacgtgctggttgccaccgacgtgctggcgcgcggcatcgacatttcc
gacgtgcgctacgtggttaacttcgacgtgccggaggacccggtcgactacatccaccgc
atcggccgcacgggccgcgccggcgagctcggttggtccctgaccttcgtgacccccgat
gacgtggccgagttctacgacatcgaggcgctcatgggcaagaccgcggacctgttcgac
gccgaggggctcgaggtgggttcgaatgccccgcaggtcgatcccgatcgcgtccccgcc
aaggctcccgcgggcaggaaggagaagaagcgccgtcgcaagacgaagaacaaggcaaag
ggcggcgcatcgcgtggtgaaggcggctcggcgcgtggcgacggcggatcgtcgcgagcg
aagggcggcgcatcgcgcgccgagggctcgagtggagtgtcagcggcgaattccaccggc
tcgcgagcgaatggcccctccggtcgttttggcgcagcggatgggcgcgttgccgacggc
ggcgcgtccaagccctcgcgccggaagcgcggcggcaagacgcgcgtgcgtgccgaggag
ggcggcgaggtcgagctgctgagcgctcgcgaggtgaagcgcatggaagcgaatcccgag
ctcaagggcgccaagcgctccggcggttcgcgctccgcgggcaaggcggggctggcgaac
gggcgtcggcgtgatgagggctccgacggttcgcgtcgctctgaccgctccggccgcgag
ggcgcttcccgccctggccgcgcggaagggtcccgctccggccgcgagggcgttttccgc
tctggtcgctccagccgccccggtcgtgacggcggcgctcgtcctgcagagcgcggcggc
cgtcacgacgacgttcgcggaagctcgtcgcgcggcgggcgcgatgcgtggcgcaattac
gacgagccctccgatcgccgttcgcgcggagggcgctccggtcgcggcggtgccggccct
cgcgcgggcagggacgatcgccaggccccgcgcggcggcaacccctcccgttccacgcgc
cgtcccggcgaccgcggcgggcgcaggtag
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