Collinsella stercoris: LK434_05320
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Entry
LK434_05320 CDS
T07953
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cstc
Collinsella stercoris
Pathway
cstc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cstc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LK434_05320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cstc03021
]
LK434_05320
03400 DNA repair and recombination proteins [BR:
cstc03400
]
LK434_05320
Enzymes [BR:
cstc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LK434_05320
Transcription machinery [BR:
cstc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LK434_05320
DNA repair and recombination proteins [BR:
cstc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LK434_05320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_A_CTD
HHH_5
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
UEA44576
LinkDB
All DBs
Position
complement(1232622..1237088)
Genome browser
AA seq
1488 aa
AA seq
DB search
MADFEATDFDAVKISLASADKIRSWSRGEVKKPETINYRTLKPEKDGLFCEKIFGPAKDW
ECSCGKYKGIRFKGIVCERCGVEVTTAKVRRERMGHIELAAPVSHIWYFKSPTSFPMSRM
LDIKSKDLEKVLYFASYIITHVDYEAREADADDLREELAADLEEIDAECARQIESLKEQG
NPENFDEFSDEEPLTPEEIAAGIVDIQEECRDEKDLRSEAFQAFMQLNERDLVSDEPLFR
EMKRYYSMYFKGDMGAEAIRDLLASIDLEQEAATLKAIIADEDSQKQKREKAVKRLEVVD
AFLKGGNDPANMILDVIPVIPPDLRPMVQLDGGRFAASDLNDLYRRVINRNNRLKRLLDL
DAPAIIVNNEKRMLQEAVDALFDNGRRGRPVSGRGGRPLKSLAEALKGKQGRFRQNLLGK
RVDYSGRSVIVTDPKLKLHQCGLPKTMALELFQPFVMKRLTELGKVENIKGAKRAIERRA
SFVWDILEEVIDGRLVLLNRAPTLHRLSIQAFEPVLVEGKAIHLHPLVCAPFNADFDGDQ
MSVHVPLSVQAQAEARILMLSSNNLRSPASGKPVNIPSQDMIIGVYYLTQARDGMPGEGH
VFASFDDALRAYDCRAEAGVDLQAKVQVRVSESEANVTLGDGTKLFRVKMGKNEVQDFDV
TGSKTARFETTIGRIIFNRQCLPADYEFINYKMVKGDIAKLVSDCCDRYPEAEVAPILDA
IKYSGFHYATTSGLTISVWDALIPDDKWQVLDRAQSNVDQINAYYEEGFLNEMERHIEVV
NEWTAATDTVASKMLAMFDEENPIYMMADSGARGSKAQLRQLGGMRGLMADMSGETIDLP
IKANFREGLLPLEYFISTYGARKGLVDTASHTSDSGYLTRRLVDVAQDVIVREEDCGTTE
GCSYNLIIPGTEDINADLVGRCFLEDVVAADGTVLFKKDEYITCVDDLKKMIDAGMKKVA
LRALLTCRSKYGVCQKCYGWDLSTRRPVAIGTAVGIIAAQSIGEPGTQLTMRTIHSGGVA
GVADITQGLPTVSRMFDIVGNVNEKILGREADLAPFSGHLAIKPEKSEYVLTLTDTDDPS
RILDEKRVPAAVQFMPGIEDGCEVRAGDQITKGFVNFRNLRQLTDIESTMHTFVENVKEV
YNSQGVDLNDKHIEVMARQMLRRVQITNPGDSRYLLGQYVDRYEFADEVDRVARLGLTPP
AAEPAILGTLKVASSIDSWLSSASFIRTAGVLTEAAIEGKVDHLLDLKSNVIVGKKIPAG
TGLKPYAKAGLTYRTEEGYQVIENLSSPHAKVLPEWAPEELKELDEELPQQLDFGAGEYG
GEGGQFTRNGRTISAEDARLYLFDDLGVSQRWTNKFSEVGIETVGDLVGKSEEDLLRIDG
IGAKAIEELRDGLEEHNLLYILDNSEDVADEEDLSQLLQMVFSPDGPDDILLGSSAPRHH
LDSDEEMIGAPAQAKDGNGVINEDMASLDELLNKLVDTDEVYPEEQED
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
gtggcagatttcgaagctactgattttgatgcggtaaagatctcgcttgcttccgccgac
aagatccgctcgtggtcgcgcggcgaggtcaagaagcccgagaccatcaattaccgtacc
ctcaagcccgagaaggacggcctgttctgcgagaagatcttcggtcccgccaaggactgg
gagtgctcctgcggcaagtacaagggcatccgcttcaagggcatcgtctgcgagcgctgc
ggcgtcgaggtgaccacggccaaggtgcgccgcgagcgcatgggccacatcgagctggcg
gcccccgtcagccacatctggtacttcaagagcccgacctcgttcccgatgagccgcatg
ctcgacatcaagtccaaggacctggagaaggtcctgtacttcgcgagctacatcatcacg
cacgtcgactatgaggcccgcgaggccgatgccgacgacctgcgcgaggagctggcggcc
gacctggaggagatcgacgccgagtgcgcccgccagatcgagtcgctgaaggagcagggc
aaccccgagaacttcgacgagttctccgacgaggagcccctcacccccgaggagatcgcc
gcgggcatcgtggacatccaggaggagtgccgcgacgagaaggacctgcgctccgaggcg
ttccaggccttcatgcagctcaacgagcgcgacctcgtctccgacgagccgctgttccgc
gagatgaagcgctactactccatgtacttcaagggcgacatgggcgccgaggccattcgc
gacctcctcgcctccatcgacctcgagcaggaggccgcgaccctcaaggccatcatcgcc
gacgaggattcccagaagcagaagcgcgagaaggccgtcaagcgcctcgaggtcgtcgac
gccttcctcaagggcggcaacgaccccgcgaacatgatcctggacgtcatcccggtcatt
ccgccggatctgcgcccgatggtccagctcgacggcggccgctttgccgcgtccgacctg
aacgacctgtaccgtcgcgtgattaaccgcaacaaccgcttgaagcgcctgctcgacctg
gacgcccccgcgatcatcgtgaacaacgagaagcgcatgctccaggaggccgtcgacgcc
ctgttcgacaacggccgtcgtggtcgcccggtctccggccgtggcggtcgcccgctcaag
tcgctcgccgaggccctcaagggcaagcagggccgcttccgccagaacctgctgggcaag
cgcgtcgactactccggtcgttccgttatcgtcaccgaccccaagctcaagctgcaccag
tgcggcctgcccaagacgatggccctggagctcttccagccgttcgtcatgaagcgcctg
accgagctcggcaaggtggagaacatcaagggcgccaagcgcgccatcgagcgtcgcgcc
tcctttgtgtgggacatcctcgaggaggtcatcgacggccgcctcgtcctgctcaaccgc
gccccgacgctgcaccgcctgtccatccaggccttcgagcccgtgctggtcgagggcaag
gccatccacctgcacccgctcgtctgcgccccgttcaacgcggacttcgacggcgaccag
atgtccgtccacgtcccgctgtccgtccaggcacaggccgaggcgcgcatcctcatgctg
agctccaacaacctgcgctcgccggcttccggcaagcccgtgaacatcccgtcgcaggac
atgatcatcggcgtgtactacctcacccaggcccgcgacggcatgccgggcgagggccac
gtgttcgcgagcttcgacgacgccctgcgcgcctatgattgccgcgccgaggccggcgtc
gacctgcaggccaaggtccaggtccgcgtgtccgagtccgaggccaacgtcacgctcggg
gacggcaccaagctgttccgcgtcaagatgggcaagaacgaggtccaggacttcgacgtg
accggttccaagaccgctcgcttcgagacgaccatcggccgcatcatcttcaaccgccag
tgcctgccggccgactacgagttcatcaactacaagatggtcaagggcgacatcgccaag
ctcgtctcggactgctgcgatcgctaccccgaggccgaggtcgccccgatcctcgacgcc
atcaagtactccggtttccactacgccaccacctcgggtctgaccatctccgtgtgggac
gccctgatcccggacgacaagtggcaggtcctcgaccgcgcccagagcaacgtcgaccag
atcaacgcctactacgaagagggcttcctcaacgagatggagcgccatatcgaggtcgtc
aacgagtggactgccgcgaccgacacggttgcgtccaagatgctcgccatgttcgacgag
gagaaccccatctacatgatggccgactccggcgcccgtggctccaaggcccagctgcgt
cagctcggcggcatgcgcggcctcatggcggacatgtccggcgagacgatcgaccttccc
attaaggcgaacttccgcgagggcctgctcccgctcgagtacttcatctccacctacggc
gcccgtaagggcctcgtcgacaccgcttcgcacacgtccgactccggttacctcacccgt
cgtctcgtcgatgtggcccaggacgtcatcgtgcgcgaggaggactgcggcactaccgag
ggctgctcctacaacctgatcatccccggcaccgaggacatcaacgccgacctcgtcggc
cgctgcttcctcgaggacgtcgtggctgccgacggcaccgtcctgttcaagaaggatgag
tacatcacctgcgtggacgacctcaagaagatgatcgacgccggcatgaagaaggtcgcc
ctgcgcgccctgctcacctgccgctccaagtacggcgtgtgccagaagtgctacggctgg
gacctctccacccgtcgtcccgtcgccatcggcaccgcggtcggcatcatcgccgcccag
tccatcggcgagcccggtacgcagcttacgatgcgcaccattcactccggcggcgtcgcg
ggcgttgccgacatcacgcagggtctcccgaccgtttcgcgtatgttcgacatcgtcggc
aacgtcaacgagaagattctcggccgcgaggccgacctggccccgttctccggtcacctg
gccatcaagcccgagaagtccgagtacgtgctcaccctcaccgacacggacgacccgagc
cgcatcctggacgagaagcgcgttcccgccgccgtccagttcatgcccggcatcgaggac
ggctgcgaggtccgcgccggcgaccagatcaccaagggcttcgtgaacttccgcaacctg
cgccagctcacggacatcgagtccactatgcacacgttcgtcgagaacgtgaaggaggtc
tacaactcccagggcgtcgacctcaacgacaagcacatcgaggtcatggctcgccagatg
ctgcgtcgcgttcagatcacaaaccccggtgactcccgctacctgctcggccagtacgtg
gaccgctacgagttcgccgacgaggtcgaccgcgtggcgcgtctgggcctcaccccgcct
gccgccgagcccgcgatcctgggtacgctcaaggtcgcgtcctcgatcgactcttggctg
tcctccgcgtcgttcatccgcacggcgggcgtcctcaccgaggccgccatcgagggcaag
gtcgaccacctgctcgacctcaagtccaacgtcatcgtgggcaagaagatcccggcgggc
accggcctcaagccgtacgccaaggccggtctgacctaccgcaccgaggagggttaccaa
gtcatcgagaacctctcctcgccccacgccaaggttcttcccgagtgggcgcccgaggag
ctcaaggagctcgacgaggagctgccgcagcagctcgacttcggcgcgggcgagtacggc
ggcgagggcggccagttcacccgcaacggccgcaccatctccgccgaggacgcgcgcctg
tacctgttcgacgacctgggcgtgtcgcagcgctggaccaacaagttcagcgaggtgggc
atcgagaccgtcggcgacctggtgggcaagtccgaggaggatctgctccggatcgacggc
atcggcgccaaggcgatcgaggagttgcgcgacggtcttgaggagcacaacctgctctac
atcctcgataactccgaggacgtggccgacgaggaggacctctcccagctgctgcagatg
gtctttagcccggacggcccggacgacatcctgctcggctccagcgcgccacgccaccac
ctcgactccgacgaggagatgatcggcgcccccgcgcaggccaaggacggcaacggcgtc
atcaacgaggacatggcctccctcgacgagttgctgaacaagctcgtcgacaccgatgag
gtctaccctgaggagcaggaggactaa
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integrated database retrieval system
