Collinsella stercoris: LK434_06490
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Entry
LK434_06490 CDS
T07953
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cstc
Collinsella stercoris
Brite
KEGG Orthology (KO) [BR:
cstc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cstc03032
]
LK434_06490
03400 DNA repair and recombination proteins [BR:
cstc03400
]
LK434_06490
Enzymes [BR:
cstc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LK434_06490
DNA replication proteins [BR:
cstc03032
]
Prokaryotic type
DNA Topoisomerases
LK434_06490
DNA repair and recombination proteins [BR:
cstc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LK434_06490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
HC2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UEA44794
LinkDB
All DBs
Position
complement(1509722..1512274)
Genome browser
AA seq
850 aa
AA seq
DB search
MKLVVAEKNIAAQKIAQLLADAGKPKNDKVYNTQVYRFTVDGEDWVSMGLAGHILAPDFP
DEILFDKQNGWYSVSAEGEVLPADVPDGLARPPYDTKRKPFLANGISIKGWKVESLPYLT
WAPIVKLPAEKEIIRVLKNLAKKADEVIIATDFDREGELIGADALNMVREVAPELPARRA
RYSALIKGEVTEAFNNLVELDQDLADAGESRQYIDLIWGAVLTRYLTLAKFGGFGNVRSA
GRVQTPTLALVVERERERMAFVPEDYWQIRGMGEASGQEFKIAHTTVRFTDKAAAEAAFA
HVSGAETGTVTAVAKRSRKQQPPVPFNTTALQAAAAAEGISPARTMRIAESLYMSGFISY
PRVDNTVYPKTLDIEGIVKGLASGTPALAPVCKKVLAGPLTPTRGKVETTDHPPIHPTGQ
GDPTTLDGGQLKLYNLIARRFLATLMGPATIENTKLSIDVAGEPFAASGDVLVEAGFREA
YPYGLKRDEQLPALAEGDVIDVRDIKLEAKQTEPPTRYSQGKLVQEMEKRGLGTKSTRAS
IIERLYAVRYLKNDPIEPSQLGIAIIDALSQFAPRVTTPEMTAELDADMTMVAEGKDTQD
HVVDHSRALLAGMLDALIEHKDDLGEAISDAVTADARVGACPKCGKDLVMKTSAKTRGSF
IGCMGWPDCDVTYPVPSGVKVSPLEGEAAVCPECGAPRIKCQPFRQKAYEQCVNPKCPTN
YEPDLKVGECAVCREAGRAGGDLIAHKSERTGKRFIRCANYEECGVSYPLPARGKLEATG
EVCEHCGAPVVVVETARGPWRICVNMDCPGKEKKPARGKAAAKKAPAKKTAAKKTTAKKA
PAKKAATKKA
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
gtgaagctcgtcgttgcagagaagaacatcgccgcgcagaagatcgcgcagctgctggcc
gatgccggcaagcccaagaacgacaaggtctacaacacgcaggtgtaccgcttcaccgtg
gatggtgaggactgggtgtccatgggccttgccggccacatcctcgcgccggactttccc
gacgagattctctttgacaagcaaaacggctggtacagcgtgtccgccgagggcgaggtc
ctgcccgccgatgtcccggacggccttgcccgcccgccgtacgacaccaagcgcaagccc
ttcctcgccaacggcatctccatcaaggggtggaaggtcgagagcctgccgtacctcacg
tgggcgcccatcgtaaagctccccgccgagaaggagatcatccgcgtcctcaagaacctc
gccaaaaaggccgacgaggtcatcatcgccacggacttcgaccgcgagggcgagctcatc
ggcgcggacgcgctcaacatggtgcgcgaggtcgcgccggagttgcccgcccgtcgcgcg
cgctactccgcgctcatcaagggcgaggtcaccgaggcgttcaacaacctcgtggagctc
gaccaggacctggccgacgccggcgagtcccgtcagtacatcgatctcatctggggcgcg
gtgctcacgcgttacctcacgctcgccaagttcggcggctttggcaacgtgcgctccgcc
ggccgcgtgcaaacgcccacgctcgccctggtggtggagcgcgagcgcgagcgcatggcg
ttcgttcccgaggattactggcagatccgcggtatgggcgaggcctccggccaggagttc
aagattgcccacaccacggtgcgctttaccgacaaggctgccgccgaggccgcgttcgcg
cacgtgagtggtgctgagaccggcacggtgacggcggttgccaagcgcagccgcaagcag
cagcccccggtgccgttcaacaccacggcgctgcaggccgccgctgccgccgagggcatc
agccccgcgcgcaccatgcgcatcgccgagtccctctacatgagcggtttcatctcctac
ccccgcgtggacaacacggtgtatcccaagacgctcgacatcgaggggatcgtgaagggt
ctcgcgtccggcacgccggcgcttgcgcccgtgtgcaagaaggtcctcgccgggcccctc
acgcccacgcgcggcaaggtcgagaccaccgaccacccgcccatccatcccacgggccaa
ggtgaccccaccacgctcgacggcggccagctcaagctctacaacttgatcgcccgccgc
ttcctcgcgacccttatgggcccggcgaccatcgagaacaccaagctctccatcgacgtc
gcgggcgaaccgttcgccgcgagcggcgacgtgctggtggaggcgggcttccgcgaggcg
tacccctacggcctcaagcgcgacgagcagctgcccgcgctggccgagggcgacgtgatc
gacgtgcgcgacatcaagctcgaggccaagcagaccgagccgcccacgcgctacagtcag
ggcaagctcgtgcaggagatggagaagcgcggcctgggcaccaagtccacgcgcgcgagc
atcatcgagcgcctgtacgccgtgcgctacctcaagaacgaccccatcgagccgagccag
ctgggcatcgccatcatcgacgcgctgtcgcagttcgccccgcgcgtgaccacgcccgag
atgaccgccgaactcgacgccgacatgaccatggtggccgagggcaaggacacgcaggac
cacgtggtggaccactcgcgtgcgttgctggccggcatgctcgacgcgctgatcgagcac
aaggacgacctgggcgaggccatctccgacgccgtgaccgccgacgcccgcgtgggcgcg
tgccccaagtgcggcaaggacctggtcatgaagacgagcgccaaaacgcgcggcagcttc
atcggctgcatgggttggcccgactgcgacgtgacctaccccgtaccgagcggcgtcaag
gtgagcccgcttgagggcgaggctgccgtgtgccccgagtgcggcgcgccgcgcatcaag
tgccagccgttccgccaaaaggcctatgagcagtgcgtgaaccccaagtgccccaccaat
tacgagcccgacctcaaggtgggggagtgcgccgtgtgccgtgaggccggacgcgccggg
ggcgatctgatcgcgcacaagtccgagcgcaccggcaagcgctttatccgctgcgccaac
tacgaggagtgcggcgtgagctatccgctgcccgcgcgcggcaagctcgaggccaccggt
gaggtgtgcgagcactgcggcgcgcccgtggtggtggtcgagacggcccgaggcccgtgg
cgcatctgcgtgaacatggactgccccggcaaggagaagaagcccgcccgcggcaaggcg
gcggcgaagaaggccccggccaagaagaccgccgcgaagaagacgactgctaagaaggct
cccgcgaagaaggctgcaactaagaaggcgtag
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