Collinsella stercoris: LK434_07360
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Entry
LK434_07360 CDS
T07953
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cstc
Collinsella stercoris
Brite
KEGG Orthology (KO) [BR:
cstc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cstc03009
]
LK434_07360 (rlmD)
Enzymes [BR:
cstc01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LK434_07360 (rlmD)
Ribosome biogenesis [BR:
cstc03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LK434_07360 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Cons_hypoth95
UPF0020
MTS
N6_N4_Mtase
Methyltransf_15
TRM5-TYW2_MTfase
PCMT
PrmA
Methyltransf_25
Methyltransf_24
DFP
ADH_zinc_N
CMAS
Motif
Other DBs
NCBI-ProteinID:
UEA44954
LinkDB
All DBs
Position
1718039..1719625
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AA seq
528 aa
AA seq
DB search
MAKQRSSSPVGRKASAGGSGHKVSAFASDRKARPTSSSRKAHPGAGGRKAQPASGCRQEP
PTVSGRKASSAISDRKASPAAIDRKARPAAGGRKARPAANSRKANPALKVSSAASDRKAP
CPIMRDCGGCEWLGLPYRKQLKRKHAAMIELYEPLIGRFGWNVHVDDALGMGPSREAGPV
TAADSPLASPRAFRHKASTPFAPGPHGEVRCGFFARGTHTIVPCPACPVEAPGARELLNE
VARLASDFGIPAYDEDRRQGQLRYAVLRCGWRTNESMLTLVTRTREVPHLDALAQAIARE
HPGIVTIAQNVNPRVTNAILGGETRLLHGKPRMRDQLLDCTFEISPVSFYQVNPQQTEVL
YQSAIEGMQLREGDTVLDTYCGSGTIGLAAAASARANGAHVRLIGVERNVEGVRDAQRNA
QVNGLEDMSDFIARDATEYMREAAEQGLNVDVLIMDPPRAGSAPAFVEAATTLRPRRIVY
ISCNPVTHVRDLEQFGEAGYRVDRLTPVDLFPHTTHTEMIATLTPATS
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcagcgctcatcttcccctgtcggccgcaaggcctccgccggcggcagcggc
cacaaggtctccgcctttgccagcgatcgcaaggcccgccccacctcgagcagccgcaaa
gcgcaccccggcgccggaggtcgcaaagcgcagcccgcctcaggctgccgccaggagccc
cctactgtgagcggccgcaaggcctcatccgccatcagcgatcgaaaagcctcccctgcc
gccattgatcgcaaggcacgtcccgccgccggaggtcgcaaagcacgccctgctgccaac
agccggaaggccaacccagccctcaaggtctcatccgcagcaagcgaccgcaaggcgccc
tgccctatcatgcgagattgcgggggatgcgaatggcttggcctgccctaccgcaagcag
ctcaagcgcaagcatgccgccatgatcgagctatacgagcccctcatcgggcgctttggc
tggaacgtgcacgttgacgacgcgctcggcatgggtccctcgcgcgaagcgggacccgtc
accgcggccgactcgccgcttgcctcaccgcgcgcgtttcggcacaaggcctcaacacca
ttcgcccccggcccccatggcgaagtgcgctgcggcttttttgcccgaggcacccacacc
atcgtgccctgccccgcgtgcccagtcgaggcaccgggggcacgagagctgctcaatgag
gtcgcgcgcctggcaagcgacttcggcattcccgcgtacgacgaggaccgccggcaggga
cagctgcgctacgccgtgctgcgctgcgggtggcgcacgaacgaatcgatgctcaccctc
gtgacgcggacgcgcgaggttccccacctcgacgcgctcgcccaggcaatcgcccgcgag
caccccggcatcgtgacgattgcgcaaaacgtcaacccgcgcgtgaccaacgcgatcctg
ggcggcgagacccgcctgctccatgggaagccccgcatgcgcgaccagctgctcgactgc
acgttcgagatatcccccgtatcgttttaccaggtaaatccccaacaaaccgaggtgctc
taccaaagcgccatcgaggggatgcagctgcgcgagggtgacaccgtgctcgacacgtac
tgcggcagcggcaccatcggccttgccgcggcggcgagcgcacgcgccaacggagcgcac
gttcgcctgataggcgttgagcgaaatgtcgagggcgtgcgcgacgcgcagcgaaatgcc
caggtcaacggcttggaagatatgagcgatttcatcgcgcgcgatgcgaccgaatacatg
cgcgaagccgccgagcaggggctcaacgtcgacgtgctcatcatggacccaccgcgcgcc
gggtccgcgcccgcttttgtcgaggccgcaacgaccctccgaccgcgccgcatcgtctac
atcagctgcaaccccgtaacgcacgtgcgcgatcttgagcaatttggcgaggcggggtat
cgcgttgaccggctgacccccgtcgacctgttcccgcacaccacccataccgagatgatc
gccacgctcacgcccgcgacgagctag
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