Collinsella stercoris: LK434_07850
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Entry
LK434_07850 CDS
T07953
Symbol
dnaX
Name
(GenBank) DNA polymerase III subunit gamma/tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
cstc
Collinsella stercoris
Pathway
cstc03030
DNA replication
cstc03430
Mismatch repair
cstc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cstc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LK434_07850 (dnaX)
03430 Mismatch repair
LK434_07850 (dnaX)
03440 Homologous recombination
LK434_07850 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cstc03032
]
LK434_07850 (dnaX)
03400 DNA repair and recombination proteins [BR:
cstc03400
]
LK434_07850 (dnaX)
Enzymes [BR:
cstc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LK434_07850 (dnaX)
DNA replication proteins [BR:
cstc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LK434_07850 (dnaX)
DNA repair and recombination proteins [BR:
cstc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LK434_07850 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNAX_ATPase_lid
AAA
AAA_22
DNA_pol3_gamma3
AAA_30
RuvB_N
TIP49
RCF1-5-like_lid
Mg_chelatase
DnaX_C
AAA_16
Rad17
AAA_19
AAA_14
AAA_18
nSTAND3
AAA_assoc_2
RNA_helicase
ORC-CDC6-like
AAA_7
AAA_33
TsaE
AAA_28
Motif
Other DBs
NCBI-ProteinID:
UEA45044
LinkDB
All DBs
Position
complement(1852965..1855871)
Genome browser
AA seq
968 aa
AA seq
DB search
MESLYRKYRPLTFESVVGQQHIVSTLKHAVAEGRLSHAYLFCGPRGTGKTTMARILAKSL
LCEGSEAARATGASGCMPDGTCPECEAIAAGTHPDVYELDAASRTGVDNVREEIINSVSF
APVRGAYKVYIIDEVHMLTTAAFNALLKTLEEPPSHVVFVLCTTDPQKILETILSRCQRF
DFHRISNEDIVGRLRFICEQEGFAFDEEALEIVARHARGGMRDALSTLEQLSVFGDGSVH
VDDARSLLGEVASTVLSEFACKIAVRDTVGLFGLVRVQADEGNDLMELTHDLVAHVRDVY
TAAIAGPKTELFDGTPEEVAALVEEARLFEGADRLARALTVLDDAALEMRNASDQRLVLE
IALTRLARPETDLTLEALAERLARLEVQLAAGVLSGPMDAAQLAAAAGPHGGAPNAVPRA
GAVPLATSAAPVVPNSASAAAPAPVSSPTADPCVTQGPARASSSPVAASGAADVSPSVRS
STSGSAAAPRSAQSGSAPAPRPAAPAASASNGPVPAPTAAAPAAAVPAQAAQPVAGAATQ
TGPSAPRAQVAPVPASQAAPAGAERPAAQGAPASPARASAPQESITIAADSQPEMAACPV
TPPAADAGDLQRRWADAVKRITAEQPSRGGLLQSSRAVSDDGETLTIGFPKGSTFALKMI
TRPDSSQLVMPIICQVFGKRSVTYVMEGAAKAPAAPAPASAQVSTFAPAQAPAPAAAPVT
ARTMPPASSPVSAGSASAAPSAPAAPGAPRAASPAPAGSAPVQASTVATPPTSAAPAPAA
ARAASAPSSAAALPAAPAASASVPAAAPSPQVEPSPQPSPSAVDQATGPTILSDRDIEAD
RKAWEDEMPPYDDAFIASYEGDDEVPPFDVPAEVPSVDSSSASAERSVGNSVPAAQTPAA
HSSAPTSSSTPAPMPSAPASGAPVPPVASASTDATPPAAPMPSLAADSDAEADPKAVLES
IWGNVVFK
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgctttatagaaagtaccgtccgcttacgttcgagagcgtggtgggccagcaa
catatcgtgtccacgctcaagcacgccgtggccgagggtcgcctgtcgcacgcgtacctg
ttctgcggaccgcgcggcacgggcaagaccaccatggcgcgcattctcgccaagtcactt
ttgtgcgagggctctgaggccgcgcgggcaaccggcgcgtcgggctgcatgccggacgga
acgtgccccgagtgcgaggccatcgcggcgggtacgcacccggacgtgtacgagctcgac
gcggcgagccgcacgggcgtggacaacgtgcgcgaggagatcatcaactcggtgagcttt
gcccccgtgcgcggcgcgtacaaggtctacatcatcgacgaggttcacatgctcaccacg
gcggcgttcaacgcgctgctcaagacgcttgaggagccgccgagccacgtggtctttgtg
ctgtgcaccaccgacccgcaaaagatcctcgagacgattttgtcgcgctgccagcgcttc
gacttccaccgcatctcgaacgaggatatcgtggggcgtctgcggttcatctgcgagcag
gagggctttgcctttgacgaggaggcgctcgagatcgtggcgcgccatgcccgcggcggc
atgcgcgatgcgctctccacgctcgagcagctttcggtgttcggcgacggctccgtgcac
gtggatgacgcccgctcgctgctgggcgaggttgcctcgacggtgctctcggaatttgcc
tgcaagatcgccgtgcgcgacacggtgggactgttcggcctggtgcgcgtgcaggcggat
gagggcaacgatttgatggagctcacacacgacctggttgcgcacgtgcgcgacgtgtat
accgcggcgattgcgggccccaagaccgagctgttcgacggcacgcccgaggaggtcgcg
gcgctggtggaggaggcgcgcctgttcgagggcgccgatcgtctggcgcgcgcgctcacc
gtgctggacgacgccgcgctcgagatgcgcaacgcgtccgaccagcgcctggtgctcgag
atcgcgctgacgaggctcgcgcgcccggagaccgatttgaccctcgaggcgctggccgag
cgtctggcccgcctggaggtgcagctcgccgccggcgtgctgagtggccccatggacgcg
gcgcagctggctgccgctgccggcccgcacggtggcgctccgaacgccgtcccacgcgcc
ggtgcggtgcctttggccacttctgcggcgccggtggttccgaattccgcctcggctgcg
gcgccggcacccgtctcctccccgactgccgatccgtgtgtgacccagggtcccgcgcgg
gcttcgagcagcccggttgccgcttctggcgcggcggacgtgagcccctctgtccgctcg
tcgacttccgggtccgctgccgcgccccgttcggctcaatccggatctgccccggcgcct
cgaccggcggcacctgctgcctcggcgtcgaatggaccggttcccgctccgactgctgcc
gcccccgctgcagccgttcccgcccaggctgcgcagcctgtggcgggcgccgcgacgcaa
accggcccgtcggcgcctcgggcgcaggtcgccccggttcccgcatcgcaggcggcgccc
gccggagctgagcgtcctgctgcgcagggggcgcccgcctcaccggcccgggcctccgct
ccgcaggaaagcatcacgattgccgccgactcccagcccgaaatggctgcgtgccccgtg
accccgccggcggccgacgcgggcgacctgcagcgtcgatgggcggatgccgttaagcgc
atcacggccgaacagccctctcgcggcggcctgctccagagctctcgggcggtgagcgac
gacggcgagacgctcacgatcggattccccaagggttcgacgttcgcgctcaagatgatc
acgcgccccgattcgagccagctggtcatgccgatcatctgccaggtgttcggaaagcgc
tcagtgacgtatgtgatggaaggcgcggcgaaggcccccgcggctccggcgcctgcttcc
gctcaggtatccactttcgccccggctcaggcgcccgcccccgcggctgcacccgtcaca
gctcggaccatgccccctgcttcgtcacccgtttccgccggctcggcttccgccgcgcct
tctgcccccgcggcccccggagcgccgcgcgccgcgtcgcccgcccctgccggctcggct
cccgtccaggcgtccacggttgccacgccgccgacatcagcggctcccgcccccgcggct
gctcgcgccgcctctgcgccttcttctgccgcggcgttgcccgccgcgcctgctgcctcc
gcatcagtgcccgcggctgcgccttcaccccaggttgagccctcgccccagccctcgcca
tccgccgtcgaccaggcaaccggtcccacgattttgagcgaccgcgatatcgaggcggac
cgcaaggcgtgggaggacgagatgcctccctacgacgacgcctttatcgcgtcgtacgag
ggcgatgacgaggtccctccctttgacgttcccgctgaggtgccatcggtggattcgtcg
tccgcgtctgccgagcggtcggtgggcaactctgtccccgccgcgcagacgcccgctgcg
cactcaagtgccccgacgtcctcaagcaccccggcaccgatgccttctgcccccgcgagc
ggcgcgcccgttccgccggtggcgtctgcgtcgacggacgccaccccgccggcagccccc
atgccttcgcttgcggcagactccgacgccgaggccgatcccaaggccgtcctcgagagc
atctggggcaacgtggtctttaagtag
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