Collinsella stercoris: LK434_08465
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Entry
LK434_08465 CDS
T07953
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
cstc
Collinsella stercoris
Pathway
cstc03030
DNA replication
cstc03430
Mismatch repair
cstc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cstc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LK434_08465
03430 Mismatch repair
LK434_08465
03440 Homologous recombination
LK434_08465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cstc03032
]
LK434_08465
03400 DNA repair and recombination proteins [BR:
cstc03400
]
LK434_08465
Enzymes [BR:
cstc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LK434_08465
DNA replication proteins [BR:
cstc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LK434_08465
DNA repair and recombination proteins [BR:
cstc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LK434_08465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
RNase_T
DEAD
Motif
Other DBs
NCBI-ProteinID:
UEA45156
LinkDB
All DBs
Position
complement(2020442..2023369)
Genome browser
AA seq
975 aa
AA seq
DB search
MSVSVPASPLAMAQAVLPGTPQEVIDAYATLSARAETRSFGLIEDDVVVLDTETTGLSHR
ENELIEIAAARLRGREVVERFDTFIKPHALIPAEITELTSITNADVAHAPSAEEAVARLA
DFVGGAPVIAHNAAFDRGFIEAVSGGAEVTDIWIDSLALSRIALPRLSSHKLASMAELFG
CSGVSHRANADVEALCGVWRILLCALDDLPSGLMRRLADMHPDVAWSYRPIFSFLAGLHP
DAVFSLVGARQEILAADAATPASSAARMDADELPGLELPSRDEVEACFEPGGLVNRMYPG
YEPRAEQVQMAAEVRDALATSTHRVIEAGTGVGKSIAYLVPFAQAAKRNNITVGIATKSN
NLADQLIHHELPRLAREMEGGLAYCALKGYDHYPCLRKLERLARANEVQTTRDPADTLTA
IAVIYAYACQSPAGDLDSLGIRWRSVRKADLTTSSRECARRLCPFYPDKCMVHGSRRRAA
RADVVVTNHSLLFRNVAADGKILPPIRHWVVDEAHSIESEARRQWALTVSAEESRSIFER
LGGARTGALGKIARDLATSDAATLFMGLTAKATATTQRASLAMAELFDAVRDLVRSGRAD
GSYDNANMWISRETRESDAWGVFAEVAQTALDALDEASKNLASLVETVAQEKPEFVTDVA
DGQRRLKETLDALKLVVLGTDERYVYSCQVNRRLKAGGESLSAERLDIGEALAESWLPEM
HTAIFASATMTVSGSFDHFTHAVGLDRLDRRAYRSLHLDSSYDFERNMAVVVAGDLPDPR
NRAAYLDAMECLLVDVHVSMGGSTLTLFTNRRDMEELFERVAPRLAQEGLSLDCQRKMAS
AKLLRDRFLSDTASSLFALKAFWEGFDAAGETLRCVVIPKLPFSSPTDPLSCERGVREDR
AWARYSLPEAVLEVKQAAGRLIRTSTDSGVLVLADSRLVTKGYGKKFLSSLPAPYQRIEC
AQVGKYLQLWRASHR
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgtctgtccccgcctcccccctggcgatggcgcaggcggtgctcccgggcacc
ccgcaggaggtcatcgatgcgtatgcgacgctctccgcccgtgcggagacccgttcgttt
ggcctgatagaagacgatgtggtggtgctcgacaccgagacgacgggtctttcccaccgg
gagaacgagctcatcgagattgctgccgcgcgcctgcgcggcagggaggtcgtcgagcgc
ttcgacaccttcatcaagccgcacgcgctcatcccggcggagatcacggagctcacgagc
atcacgaacgccgatgtggcgcatgctccctccgccgaggaggccgtggcacggctcgcc
gattttgtgggcggagctccggtgatcgcgcacaacgccgcatttgaccgtgggttcatc
gaggcggtctcgggcggggccgaggtgaccgacatttggatcgactcgctcgcgctctcg
cgcattgccctgccgcgtctgagctcgcataagctcgcctccatggccgagttgttcggg
tgctcgggcgtgtcgcaccgcgcaaacgcggacgtggaggcgctgtgcggcgtgtggcgc
atcctgttgtgcgccctcgacgacctgccctctggcctgatgcgccgcctggcggacatg
cacccggatgttgcgtggagttaccggccgatattcagctttttggctggcttgcacccc
gatgccgtcttctcgctggtgggcgcccgtcaggagatcttggcggcggacgccgcgacg
ccggcgtcgtcggcggcgcgcatggacgccgacgagctccccggtcttgagctgccctcc
cgcgacgaggtggaggcgtgctttgagccgggcggcttggtaaatcgcatgtatccaggg
tatgagccgcgcgccgagcaggtgcagatggcggctgaggtccgggatgcgctcgcgaca
tcgacgcaccgcgtgatagaggcgggcacgggcgtgggcaagtcgatcgcctatctggtc
ccctttgcccaagccgccaagcgcaacaacatcacggtggggatcgccaccaaatcgaac
aacctggccgaccagctcatccaccacgagctgccgcgcctggcccgcgagatggagggc
ggccttgcctattgcgccctcaagggatacgaccattatccgtgcctgcgcaagctcgag
cgccttgcccgcgctaacgaggtgcagactacgcgcgatccggcggataccctgaccgcg
atcgccgtcatatacgcctacgcctgccaatcgcctgcgggcgacctcgacagcctgggg
attcgctggaggagcgtccgcaaggcggatctcaccacgtcttctcgcgagtgcgctcgc
cggctgtgcccgttttacccggataagtgcatggtacacggctcccgccgccgtgcagcc
cgtgcggacgtggtagtgaccaatcactcgttgctcttccgcaacgtggcggcagatgga
aagatcttgccccccattcgccattgggtggtcgacgaggcccattccattgaatccgag
gcgcgacgtcagtgggcgctcacggtttcggccgaggaaagccggtcgatcttcgagcgc
ttgggcggcgcgcgcacgggcgcactgggcaagatcgcgcgcgaccttgccacgtccgac
gcggcgacgctgttcatggggctcaccgcaaaggcgaccgcgacgacgcagcgggcgtcc
ctcgccatggccgagctgttcgacgccgtgcgcgatcttgtgcgttcgggtcgtgcggac
gggtcctatgacaacgcgaacatgtggattagccgcgagacgcgcgagagcgacgcatgg
ggcgtgttcgccgaggtcgcgcagaccgcgctcgacgcgctcgatgaggcctccaagaac
ctcgcatcgctcgtggagacggtcgcccaggaaaagcccgagttcgtgacggatgtggcg
gacggccaacggcgtcttaaggagacgctcgacgccctcaagctcgtggtcttgggaacg
gacgagcgatacgtctattcctgccaggtgaatcggcgcctcaaggccggtggggagagc
ctgagcgccgagcgcctcgatatcggtgaggcattggcggagagctggttgccggagatg
cataccgctatcttcgcctcggcgaccatgaccgtgtcgggcagttttgaccacttcacc
catgcggttgggcttgaccgcctcgaccggcgcgcgtatcgctctttgcatctcgactcg
agctacgattttgagcgcaacatggcggtcgtggtcgcgggggacctgcccgacccccgc
aatcgggcggcgtacctcgacgccatggagtgtctgctggtcgatgtgcatgtgtccatg
ggcggctcgacactcacgctgttcaccaataggcgcgatatggaggagctgttcgagcgg
gttgcgccccgcttggcgcaggaggggctgtcgctcgattgccagcgaaaaatggcgtcc
gcaaagctgctgcgcgaccggttcctctccgataccgccagttcgctgtttgctctcaag
gcgttttgggaaggcttcgatgccgccggcgagaccttgcgctgcgtggtgattcccaag
ctgccgttctccagcccgacggacccgctctcatgtgagcgcggcgtgcgcgaggatcgg
gcatgggcccgctactcgctgcccgaggcggtgctggaagtcaagcaggccgccggccgt
ctgatcaggacgtcgaccgattccggtgtgctcgtgctggccgattcccgcctggtgacc
aaggggtacggcaagaagttcctctcgtcgctcccggctccgtatcagcgcatcgagtgc
gctcaggtgggaaaatacctgcagctttggcgggcgagccatcggtag
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