Collinsella stercoris: LK434_10035
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Entry
LK434_10035 CDS
T07953
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cstc
Collinsella stercoris
Pathway
cstc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cstc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LK434_10035 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cstc03400
]
LK434_10035 (mfd)
Enzymes [BR:
cstc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LK434_10035 (mfd)
DNA repair and recombination proteins [BR:
cstc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LK434_10035 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
TRCF
ResIII
UB2H
DUF1930
Motif
Other DBs
NCBI-ProteinID:
UEA45445
LinkDB
All DBs
Position
2362691..2366278
Genome browser
AA seq
1195 aa
AA seq
DB search
MLIHRIAAQLYTDESLQAIEAALAAGEDATLAVSQSARTLMVAAQFARRPRPTVYIVSGE
EAADRAARAIAAYVGAEHVARFPERKDYPWKNTEPDDAVVAARCAAIARVAQGEPCVMVA
SARSLLRCVPPASSRYWASTTFKVGEEISFERVPELLVGMGYTRADAADMPGLFRVHGDT
VDVWAAQATAPVRMEFFGDEIDRIRLMVASTGQTIGDEDAVEISPVRELALTDDAVKRIS
AALYLPAQNDTELAALLELVQARVVTPELERFLPLMYEGTVSPLAHVHSDALVILSEPRS
LFDDCTRAYEDLERRAAEAKIARLDGLYVRPQELDFGRQQRLNYVSLIRAGGTVTAELKI
EQPALSGSDTRFMNRIQEVVNNRFACVFAIPDRGARESMELSFTDENIPFEESLQAAPEN
TGAVGSSDVRVTLLKRDADKLNERGIEDGAPITVPTITRGRVTFVDAPIPSGVVVPSAHV
AVFSLADLNSRMDGRRGRARHRVDITEVTFPFKPGDYVVHSTHGVALFAEIVRQEVGGKE
RDYFLLEYAGGDKLYVPLEQVDRITCYVGPDGDNPRLTRLNTADWSRATAKARKSAKKLA
FDLVDLYTRRSSITGFAFGPDSAAQVEMEESFPYDETHDQLDAIADIKADMESTKPMDRL
LCGDVGFGKTEVALRAAFKCVDGGRQVMVLCPTTILAQQHYETFFERFAPFGVEVEVLSR
FRTPGQQRRALAAFAEGKVDVLIGTHRLLSADVNPHELGLVIIDEEQRFGVQHKEQLKNM
REQIDVLTLSATPIPRTMQMAMSGVRDMSLITTPPTGRRAVAVHVGEYDPDVVSAAIRLE
IGRGGQVYYVSNRVKTIDDAVERVLEAAPEARIGVAHGKMSPREVEDVMVQFATKKIDVL
IATTIVESGIDNASANTLIIEDSQRLGLAQLYQLKGRVGRSATQAYAYFMFPGELPLTEE
ATARLTALSEFQDLGSGMRIAMRDLEIRGAGSLVGAEQHGNLSSVGFDLFTQMLGQAVAE
ARGESGGADVEQAGVGINLPADFFLSEEYVPAVDRRVLVYRKLAAADMLEAVDALQEECE
ETFGELPEAAQNLFDRTRIRIRADRLGLESVSLVAGKLTYQGVDVPKDVAFELRTKLGAI
SFPKTRKFTVPYKAGAGAGSGVGRGLNADVSNGGMGPVQAALAILTQLGPSGDDD
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgctcatccatcgcattgccgcgcagctgtataccgacgaatcactccaggccatcgaa
gcggcgctggcggctggggaggatgccacgctggccgtttcccagtccgcgcgcacgctc
atggtggcggcgcagttcgcccgccgcccgcgcccgacggtctacatcgtctcgggtgag
gaggccgccgaccgcgcggctcgtgcgattgcggcgtatgtgggcgcggagcacgtggcg
cgtttcccggagcgcaaggattatccctggaagaacaccgagcccgatgacgccgtggtc
gccgcgcgttgcgccgccatcgcccgggtggcgcaaggcgagccgtgcgttatggtcgcc
tctgcgcgctcgctcttgcgttgcgtgcccccggcatcgagccgttattgggcatcgacg
acgttcaaagtgggggaggagatctcctttgagcgcgtgcccgagctgctggttggcatg
ggctacacgcgtgcggatgccgccgacatgccgggactcttccgcgtgcacggcgacacg
gttgacgtgtgggccgcgcaggcgacggcgcctgtgcgcatggagtttttcggcgacgag
atcgaccgcatccgcctcatggtcgcctcaaccgggcagaccatcggcgacgaggatgcc
gtcgagatctcgcccgtgcgcgagctcgccctcaccgacgatgccgtaaagcgcatctct
gcggcactgtatctgcccgcgcaaaacgacaccgagctcgccgcgctgctcgagttggtg
caggcgcgtgtggtcacgccggagctcgagcgattcttgccgctcatgtacgaggggacg
gtcagcccgcttgcgcacgtccatagcgatgcgctggtcatcctgtccgagccccgttcg
ctgttcgacgactgcacgcgtgcgtacgaggacctggagcgccgggccgccgaggccaag
atcgcgcggctggacggtttgtacgtgcgcccgcaggagctcgactttggccggcaacag
cgcctgaactacgtgagcctcatccgcgcaggcggcacggtgaccgccgagctcaagatc
gagcagcccgcgctctccgggtcggatacgcgcttcatgaaccgcatccaagaggtggtg
aacaaccgttttgcctgcgtgttcgccattcccgaccgcggcgcgcgcgagtcgatggag
ctttccttcaccgacgagaacatcccttttgaggagtccctgcaagcagcgcccgagaac
acgggcgcggtgggcagctccgatgtgcgcgtgacgctgctcaagcgtgatgcggacaaa
ctcaacgagcgcggtatcgaggatggcgccccgatcaccgtccccaccatcacgcgtggc
cgggtgacttttgtcgatgcccccatcccctcgggcgtggtggtacccagcgcgcatgtg
gcggtgttcagcctcgccgacctgaatagccgcatggacggccgccgcgggcgcgcgcgg
catcgcgtggacatcacggaggtgaccttcccattcaaaccgggtgattacgtggtgcac
agcacgcacggtgtggccctctttgccgagatcgttcgccaggaggttggaggcaaggag
cgtgactacttcctgctcgaatacgccggcggcgacaagctctacgtgccgcttgagcag
gtcgatcgcattacgtgctacgtgggccccgatggcgacaacccgcgccttacccgcctg
aacaccgccgactggagccgcgctacggcaaaggcgcgcaagagcgccaagaagctcgcc
ttcgacctcgtggacctctacacgcgccgcagttcgatcacgggttttgcctttgggccg
gatagcgccgcgcaggtcgagatggaggagagcttcccctacgacgagacgcatgaccag
ctcgacgccatcgccgacatcaaggcagacatggagtccaccaagcccatggatcgcctg
ctgtgcggcgacgtgggattcggcaagaccgaggtggccctgcgagcggcgttcaaatgc
gtggacggcggccggcaggtcatggtgctgtgccccaccacgattttggcgcagcagcat
tacgagacgttcttcgagcgcttcgccccgttcggcgtggaggtcgaggtgctctcgcgc
ttccgcacgccggggcagcagcgccgcgcgctggccgcgttcgcggaagggaaggtcgac
gtgctcatcggcacgcaccgcctgctttccgccgacgtgaacccgcatgagctaggcctg
gtgatcatcgacgaggagcagcgctttggcgttcagcacaaggagcagctcaagaacatg
cgcgagcaaatcgacgtgctcacgctctcggcaacgcccattccgcgcaccatgcagatg
gcgatgagcggcgtgcgcgacatgagcctcatcaccacgcctcccaccggccgccgcgcg
gttgcggtgcacgtgggcgagtacgacccggacgtggtgagcgcggccatccgcctggag
atcggccgcggcgggcaggtgtactacgtgtccaaccgcgtcaagaccatcgacgatgcg
gttgagcgcgtgctcgaggccgccccggaggcgcgtatcggcgtggcgcacggcaagatg
agcccgcgcgaggtcgaggacgtgatggtgcagttcgccaccaagaagattgacgtgctc
atcgccaccaccattgtggagagcggtatcgacaacgcgagcgccaacacgctcatcatc
gaggattcgcagcgcttgggcttggcgcaactgtaccagctcaagggccgcgtgggccgc
tccgccacgcaggcgtacgcgtacttcatgttcccgggcgagctgccgctcaccgaggag
gccacggcgcgcctcaccgcgctttccgagttccaggacctgggcagcggcatgcgcatc
gccatgcgcgacctcgagatccgcggcgcgggttctctggttggcgccgagcagcacggc
aacctgtcgagcgtgggttttgacctgttcacgcagatgctgggccaggcggttgccgag
gcgcgcggcgagtcgggcggcgcggacgttgagcaggcgggcgtgggcatcaacctgccg
gcggacttcttcctctccgaagagtacgtgcccgccgtggaccgccgcgtgctcgtgtac
cgcaagcttgcggcggcagacatgctcgaggccgtggatgcgctgcaggaggagtgcgag
gagacgttcggcgagttgcccgaggccgcgcagaacctgttcgaccgcacgcgcatccgc
atccgtgcggatcgtttgggcttggagagcgtgtcgctggttgcgggcaagctcacgtac
cagggcgttgacgtgcccaaggacgtggcgttcgagctgcgcaccaagctgggcgcgatc
agcttccccaagacgcgcaagttcaccgtgccctataaagcgggtgccggcgcgggcagc
ggcgtgggccgcggcctgaacgccgatgtctcgaacggcggcatgggtcccgtccaagcg
gcgctcgcgatccttacgcagcttggtcccagtggcgatgacgattag
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