Conchiformibius steedae: H3L98_00980
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Entry
H3L98_00980 CDS
T06730
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cste
Conchiformibius steedae
Brite
KEGG Orthology (KO) [BR:
cste00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cste03019
]
H3L98_00980 (hrpA)
Enzymes [BR:
cste01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H3L98_00980 (hrpA)
Messenger RNA biogenesis [BR:
cste03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H3L98_00980 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
AAA_19
HA2_N
AAA_25
AAA_23
nSTAND3
NACHT
T2SSE
SRP54
ABC_tran
RsgA_GTPase
zf_C2H2_ZNF598
Motif
Other DBs
NCBI-ProteinID:
QMT33650
LinkDB
All DBs
Position
complement(119809..123792)
Genome browser
AA seq
1327 aa
AA seq
DB search
MQQPDLSQVLAKDRYFLQRAFKQPQKFGGLAKVQQKYQKSHEIYQKRLQNLPKPQFDDSL
PVHEKRAEIRDAIAANQVTIICGETGSGKTTQLPKICLELGRGAAGLIGHTQPRRLAARS
VAERIAEELGQNIGQAVGYKVRFTDHTARDASIKLMTDGILLAETQTDRFLTAYDTIIID
EAHERSLNIDFLLGYLKQILPQRPDLKVIITSATIDAERFSQHFNGAPVIEVSGRTYPVD
VLYRPLQADDEDEAEIETADAIVDAADELARFGTGDILVFLPGEREIRETAEALRKSPLR
KNDDILPLFARLSAQEQHKIFHPQGDTRRIILATNVAETSLTVPRIRYVIDTGLARVKRY
SARAKVEQLHVEKISQAAARQRSGRCGRVSAGVCIRLYSQEDFEQRPPFTDPEIIRSNLA
AVILRMAALKLGDVAAFPFLEAPDQRYINDGFQVLQELGAVNDKNQLSKTGEQMSRLPID
PKISRMLLAAQKHDCVAEMLVIVSALSIQDPRERPLEAREAANKAHERFADKQSDFLSYL
NIWDSFQRERDKGLTNKQLVQWCHQYFLSHLRMREWRELHKQLADIAVEMGLVEKERAFR
QPEKVAQLQANETVQDQDLSAKLKQKQLDKKQHRAQIRAKKAAGYEQIHRALLTGLIANV
GMKSPEGHDYTGARGSHFHLFPASSLFKAKPKWVMAAELTETTKLYARDVAEIKPEWIEA
EAPHLVRYHYFEPHWEQKRGEVVASERVTLYGLTVLPRRPIAYGKVAPEEAREIFIRSAL
VAQECDLKAAFFIHNKKLIREISELEHKSRKQDVLVDEEALFAFYHDRLPENYQVSENKT
VALADIRTFEAWLKTVDEKQLFLSREDLMQHAAAHITEEQFPKFWRNQDGKFKLNYRFEP
HHPLDGVTLTVPLTVLNRVNAAELEWLVPGMIREKLQLLIKALPKQIRRVCVPVPDFITR
FLAAEPDHSQPILPQLAHAVAKHTGDMRLLEQINLDDWAAQRLPEHCYANIRVVDDGGQE
LATGRDLAQLQQQLGNAAAMTFRDNTQEFERDNLTDWSIGTLPESIKFARGKQQLTGYLA
LQKEKNGNIALRLFDTPEAAAHAHRAGVIALMQLQLKDHMKDLNKGIQGFTQAAMLLKHI
PADTLRDDLTQAVCDRAFIGEDELPRSEKAFKEQIKRARSRLPAVKEALSRYLQETAAAY
TELNGKLGKHPLTPLLRRRVEQLLSAGFATRTPWAQWQRLPVYLKAMTLRMEKYSANPAR
DQAREADINQLEQMLNDKLQSLTRQNQPVFDELLAFAWQLEELRVSLFAQELKTPHPVSV
KRLLRMF
NT seq
3984 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagcccgatttatcccaagtgcttgccaaagaccgttatttcttacaacgtgcg
tttaaacagccgcaaaaattcggcggtttggcaaaagttcaacaaaaataccaaaaatcc
cacgaaatttaccaaaaacgcctacaaaacttgcccaaaccgcagtttgacgacagcctg
cccgtgcatgaaaaacgcgccgaaatccgcgatgccattgccgctaaccaagttaccatt
atttgtggcgaaacgggttcgggtaaaaccacgcagctgccgaaaatctgtttggaattg
gggcgcggcgcggcaggtttaatcgggcatacccaaccgcgccgtttggcggcgcgctct
gtggcggaacgcattgctgaagagctggggcagaatattgggcaagccgttggttataaa
gtgcgttttaccgaccacaccgcacgcgatgccagcatcaaactgatgacagacggcatt
ttgctggcggaaacccaaaccgaccgttttcttaccgcttacgacaccattattattgac
gaagcgcacgagcgcagcctgaatattgatttcctacttggctatctgaaacaaattctg
ccacagcgacctgatttaaaagtcattatcacatcagcgaccattgatgccgagcgtttt
tcccagcattttaacggcgcacccgtgattgaggtaagcgggcgcacctatcctgtggac
gtgctgtatcgccccttgcaagccgatgatgaagatgaagcagaaatagaaaccgccgat
gccattgtggatgcggcggacgaattggcgcgttttggcacaggcgatattttggttttt
ctaccgggtgagcgcgaaatccgcgagactgccgaagccttacgcaaatcgcccttgcgt
aaaaatgatgatattttaccgctatttgcgcgactttccgcgcaagagcagcacaaaatt
ttccatccgcagggcgacacgcgccgcattattcttgccaccaacgtcgctgaaacctcg
ctaaccgtgccgcgcatccgctatgtgattgatacgggtttggcgcgggtgaaacgctat
tcggcgcgggcaaaagtggagcagttgcacgttgaaaaaatctcgcaggcagcggcgcgg
caacggtcggggcgttgcgggcgcgtatcggcaggcgtatgcatccgtttgtattcgcaa
gaagattttgaacaacgcccaccgtttaccgaccccgaaattatccgcagcaatttggcg
gcggtgattttacgtatggcggcgctgaaattgggcgatgtggcggcgtttccgttttta
gaagcgcccgaccagcgttatatcaacgatggttttcaagttttacaagaacttggcgcg
gtaaacgacaaaaaccaattaagcaaaacaggcgagcagatgtcgcgcctgccgatagac
ccgaaaatctcgcgtatgctgttggcggcgcaaaagcatgattgcgtggcggaaatgctg
gtgattgtgtctgccttgtcgattcaagacccgcgcgaacgccctttggaagcgcgtgaa
gcagcgaataaggcgcatgagcgttttgccgataagcagtcggattttttaagttatttg
aatatttgggattctttccagcgcgagcgtgataagggcttgaccaataagcagttggtg
caatggtgccatcagtattttttatcgcatttgcgtatgcgcgagtggcgcgaattgcat
aagcaactggctgatattgcggtagaaatgggtttggtggaaaaggaacgcgcgttcagg
cagcctgaaaaagtggcgcaactgcaagccaacgaaacggtacaagaccaagatttatcc
gccaaattaaaacaaaaacaattggataaaaaacagcatcgcgcccaaatccgtgccaaa
aaagccgcaggctacgaacaaatccaccgcgctttattaacgggcttaatcgccaacgtg
ggtatgaagtcgcctgaaggacacgactacacaggcgcacgcggcagccattttcatttg
tttcccgcgtcgtctttgtttaaagccaaacccaaatgggtgatggcggcggaactgact
gaaacgacaaaactttatgcccgcgatgtggcggaaatcaagcccgaatggattgaagcg
gaagcgccgcatttggtgcgctatcattattttgagccgcattgggaacaaaaacgtggc
gaagtggtggcaagtgagcgcgtaaccctttatggtttaacggttttgccgcgccgtccg
attgcttatggcaaggttgcgcccgaagaagcgcgggaaatttttatccgcagcgcattg
gtggcgcaggaatgcgatttaaaagcagcgttttttatccacaataaaaaactgattcgt
gaaatcagcgaattagagcataaatcgcgcaagcaagatgtgttggtggacgaagaagcc
ttgtttgcgttttaccacgacaggctgcctgaaaattatcaagtatcggaaaacaaaacg
gttgcgctggcggatatccgcacctttgaagcgtggctgaaaacagttgatgaaaaacaa
ctatttttgtcgcgcgaagatttgatgcagcacgccgccgcgcacattaccgaagagcag
ttccccaaattttggcgtaatcaggacggaaaatttaaactaaattaccgttttgaaccg
catcacccgcttgacggcgttacgctgaccgtaccgctaaccgtattaaaccgcgtcaac
gccgccgaattggaatggctcgttccgggcatgatacgcgaaaaattacagttgctgatt
aaggcattacccaaacaaatccgccgcgtatgtgtgcctgtgcctgattttattacccgt
tttctcgctgccgaacctgaccacagccagccgattttgccgcagcttgcccatgccgtt
gccaaacacacgggcgatatgcgtttgttggaacagattaatttggacgattgggctgca
cagcgtttacccgaacattgttacgccaatatccgcgtggtggacgatggcggacaggag
ttggcaacggggcgcgatttggcgcaactgcaacagcagcttggcaacgccgccgccatg
actttccgcgataatacccaagaatttgaacgggataacttgaccgattggagcatcggc
acgctgcctgaaagcattaaatttgcgcgtggcaaacagcagctcacgggttaccttgcc
ctacaaaaagaaaaaaacggcaacatcgccttacgcctgtttgatacgcccgaagctgcc
gcacacgcccaccgtgcaggcgtgattgcgctgatgcagcttcagcttaaagaccatatg
aaagatttaaacaaaggtattcaaggttttacccaagcagcaatgttgctgaaacatatt
cctgccgacaccctgcgcgatgatttgacccaagccgtgtgcgaccgcgcctttatcggc
gaagacgaactgccgcgcagtgaaaaagcctttaaagaacaaattaaacgcgcccgcagc
cgcttgcctgcggtaaaagaagccctgagccgctatttgcaggaaaccgccgccgcctat
accgaattaaacggcaaactgggtaaacatccgctaacgccattgctgcgtcgccgtgtg
gaacagctactttcggcaggatttgccacgcgtaccccgtgggcgcaatggcaacggctg
cccgtgtatctaaaagccatgaccctgcggatggaaaaatatagcgccaatcctgcccgc
gaccaagcaagggaagcggatattaaccagcttgaacagatgctaaacgataagttacaa
tcactaacacggcaaaaccagcctgtgtttgatgaattgttggcgtttgcttggcagtta
gaggaattgcgcgtttccttgtttgcgcaggagttgaagacgcctcatccagtatcggtt
aaacggttgttaagaatgttttga
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