Conchiformibius steedae: H3L98_01945
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Entry
H3L98_01945 CDS
T06730
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cste
Conchiformibius steedae
Pathway
cste03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cste00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H3L98_01945 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cste03021
]
H3L98_01945 (rpoC)
03400 DNA repair and recombination proteins [BR:
cste03400
]
H3L98_01945 (rpoC)
Enzymes [BR:
cste01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H3L98_01945 (rpoC)
Transcription machinery [BR:
cste03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H3L98_01945 (rpoC)
DNA repair and recombination proteins [BR:
cste03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H3L98_01945 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QMT33822
LinkDB
All DBs
Position
complement(308685..312875)
Genome browser
AA seq
1396 aa
AA seq
DB search
MNLTDLFSPLQQAGSEEFDAIKIGIASPDTIRSWSYGEVKKPETINYRTFKPERDGLFCA
KIFGPVKDYECLCGKYKRLKFKGVTCEKCGVEVTLTKVRRERMGHLELAAPVAHIWFLKS
LPSRLGMVLDMTLRDIERVLYFEAFVVTDPGLTTLQRRQLLSEEDYYAKIEEFGEEFDAH
MGAEGVRELLRTMDIEKEIEMLRQELQSTGSDTKIKKLAKRLKVLEAFQRSGMKLEWMIM
DVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPDIIVRNEKRML
QEAVDSLLDNGRRGKAMTGANKRPLKSLSDMIKGKSGRFRQNLLGKRVDYSGRSVITVGP
YLRLHQCGLPKKMALELFKPFIFHKLEQRELATTVKAAKKLVEQEVAEVWDILEEVIREH
PILLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME
ARTLMLASNNVLAPANGEPIIVPSQDIVLGLYYMTRERINGKGEGTLFADVKEVHRAYHT
KQVELGSKITVRLREWVKNESGEFEAVLNRYETTVGRALLSEILPKGLPFEYVNKALKKK
EISKLINASFRLCGLRDTVIFADHLMYTGFALAAKGGISICVDDMEVPKEKPALLAAANA
EVKEIEEQYQKGLVTNGERYNKVVDIWGAAGDKIAKAMMDNLSKEPVIDREGNEVFQESF
NSIYMMADSGARGSAAQIKQLSGMRGLMAKPDGSIIETPITANFREGLTVLQYFIATHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTDEGFSMKAVVQGGDIIESLRERI
LGRVAAADVVDPSSGATLVEAGTLLDERLVDLIDASGVDEVKVRTPITCQTRYGLCAKCY
GRDLARGKLVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQVEAKSNGTVR
FSSQMRYIANPKGELIVITRSAEIVIHDQMGRERERHKVPYGATLKVYDGEELQAGALLA
TWDPHTHPIITEYAGRVEFENVEEGVTVTKQTDENTGLSTLVVIDGKRRASSSSTSKLLR
PTVRLLDENGEYVVIPGTSTPVSVAFQTGAVIAVREGQEVGKGVVIARMPQASTKTRDIT
GGLPRVAELFEARIPKDAGMLAEVTGTVSFGKETKGKQRLIITDLDGVATETLVSKEKQL
LVHDGQVVNKGETVVDGAVDPHDILRLQGIEALARYIVQEVQEVYRLQGVKISDKHIEVI
IRQMLRRVTITDPGDTGFITGEQVERAEVMIANEHAEAEGKEPARFENVLLGITKASLST
DSFISAASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLSYHRSRRAAWQQL
QRTADTSDSEAAEAAE
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgaacttgacagacttattcagccccctgcagcaggcagggtcggaagaatttgatgcc
attaaaatcggcattgcctcgcccgacacgattcgttcgtggtcgtatggcgaagtgaaa
aaacccgaaaccattaactaccgcaccttcaagcccgagcgcgacggcttgttttgcgcc
aaaatcttcggaccggtaaaagactacgaatgtttgtgtggtaaatacaaacgcctgaaa
tttaaaggtgtaacctgcgaaaaatgcggtgtggaagtgacactgaccaaagtgcgccgc
gagcgcatgggtcacttggaactggctgcgcctgttgcccatatttggtttttgaaatcg
ctgccttcacgcttgggcatggtattggacatgaccctgcgcgatattgagcgcgtgctg
tattttgaagcctttgtcgttaccgaccccggtttgaccactttgcaacgccgccaattg
ttgagcgaagaagactattacgccaaaattgaagagtttggcgaagagtttgacgcacac
atgggcgcggaaggcgtacgcgagctgttgcgtaccatggacatcgagaaagaaatcgag
atgttgcgccaagagctgcaaagcacgggttcggacaccaaaatcaaaaaacttgccaag
cgtttgaaagtattggaagccttccagcgttcgggtatgaagctggaatggatgattatg
gacgtgctgcccgtgctgccgcctgatttgcgtcccctcgtgcctttggacggcggacgt
tttgccacttccgatttgaacgatttgtaccgccgcgtgattaaccgtaacaaccgttta
aaacgcctgctggaactgcgcgcgcccgatattatcgtgcgtaatgaaaaacgtatgttg
caagaagcagtggattcgctgctggacaacggtcgtcgcggtaaggcgatgacgggtgcg
aacaaacgtcccttaaaatccctgtccgatatgattaagggtaaaagcggtcgtttccgc
caaaacctgctgggtaaacgggtggactactctggtcgttccgtgattaccgtaggtcct
tacctgcgcctgcatcaatgcggtttgccgaaaaaaatggctctggaattgttcaaaccg
tttattttccacaagctggaacagcgcgagttggcaaccaccgttaaagcggcgaaaaaa
ttggttgagcaggaagtggcggaagtttgggatattttggaagaagttatccgcgaacac
ccgattttgctgaaccgtgcgcctaccttgcaccgtctgggtattcaagcgtttgagccg
attttgattgaaggtaaagccattcagctgcaccccttggtgtgtgctgcgtttaacgcc
gactttgacggcgaccaaatggcagtacacgttcccttgagcttggaagcgcaaatggaa
gcgcgtacgctgatgctggcgtctaacaacgtgttagcccctgccaacggcgagccgatt
atcgtaccgtctcaagacatcgtattgggtttgtactacatgacccgcgagcgcatcaac
ggcaagggcgaaggcactttgtttgccgatgtcaaagaagtgcaccgcgcctaccacacc
aaacaggtggagttaggcagcaaaatcaccgtgcgtctgcgcgaatgggtgaaaaacgaa
tcaggcgagtttgaagcggtgttgaaccgttatgaaaccacggttggtcgtgcgctgctg
tctgaaatcctgcctaaaggtttgccgtttgaatatgtaaacaaagcactgaagaaaaaa
gaaatctccaagctgattaatgcttcgttccgcttgtgcggtttgcgcgataccgtgatt
tttgccgaccacctgatgtacacgggctttgctttggcagccaaaggcggtatttccatt
tgcgtggacgatatggaagtgcctaaagaaaaacccgcgctgctggctgctgccaatgct
gaagtgaaagaaattgaagagcaataccaaaaaggcttggtaaccaacggcgagcgttac
aataaagtggtggatatttggggcgcggcaggcgataaaatcgccaaagcgatgatggac
aatctgtctaaagaacctgtgattgaccgtgaaggcaatgaagtgttccaagaatcgttt
aactctatctacatgatggcggattcgggggcgcgtggttcggcagcgcagattaaacag
ctttccggtatgcgcggtttgatggcgaaacctgacggctccattattgaaacgccgatt
actgccaacttccgtgaaggtttgacagtattgcaatactttattgcgacacacggtgcg
cgtaaaggtttggcggataccgctttgaaaaccgcgaactctggttacctgacccgccgt
ttggtggacgtgacccaagatttggtggtggtggaagacgattgcggtaccgatgaaggc
ttctccatgaaagccgtggtacaaggtggcgatattatcgaatccttgcgtgagcgtatt
ttgggacgtgtggcggctgctgatgtggtggacccgtccagcggcgcgactttggtagaa
gcaggcactttgttagacgagcgtttggtggatttgattgatgcttcaggtgtcgatgaa
gtaaaagtacgcaccccgattacctgtcaaacccgttacggcttgtgtgccaaatgttac
gggcgcgacttggcgcgtggtaaattggtgaattcgggcgaagccgtgggcgtgattgcc
gcgcaatccatcggcgaaccgggtacacagctgaccatgcgtaccttccacatcggtggt
gcggcatcgcgtgcggcggctgccagccaagtagaagccaaatccaacggtacggtgcgt
ttctctagccaaatgcgttacatcgccaatcccaaaggcgagctgattgtgattacccgt
tctgccgaaatcgtgattcacgaccagatgggacgtgagcgcgaacgccacaaagtgcct
tacggtgcgactttgaaagtgtatgacggcgaagaattgcaggcaggcgcactgttggcg
acttgggacccgcatacccacccgattatcaccgaatacgcagggcgtgtggaatttgaa
aacgtagaagaaggcgtaaccgttaccaagcaaaccgatgaaaacacaggtttgtctacc
ttggtggtgattgacggtaaacgtcgtgcttcttcatcttccaccagcaagctgctgcgc
cccaccgtgcgcctgttggacgaaaacggcgaatatgtggtgattcccggaaccagcacg
cccgtatcggtggcgttccaaacgggtgcagtgattgccgtgcgtgaaggtcaggaagtg
ggcaaaggcgtggtgattgcgcgtatgccgcaggcttctaccaaaacccgcgatattacg
ggtggtctgccgcgtgtggcggaactgtttgaggcacgcattcccaaagatgcgggcatg
ctggcagaagtaacgggtacagtatcgttcggtaaggaaaccaagggcaaacaacgcctg
attattaccgatttggacggtgttgccaccgaaacgctggtgtctaaagagaaacagctg
ctggtgcatgacggtcaggtggtgaataagggcgaaaccgtagttgatggcgcggtagat
ccgcatgatattctgcgtttgcaaggtattgaagccttggcgcgttatattgtgcaggaa
gttcaggaagtttaccgcttacagggcgtgaagatttctgacaagcacattgaagtgatt
atccgccagatgctgcgccgcgtaaccattaccgaccccggtgatacaggctttattacg
ggcgaacaggtagagcgtgccgaagtgatgattgccaacgaacacgccgaagccgaaggc
aaagagcctgcgcgttttgaaaacgtgttgttgggtattaccaaagcgtctttgtctacc
gacagctttatttcggcggcatcgttccaagaaaccacacgcgtgttgaccgaagcggca
attatgggcaaaaaagacgatttgcgcggtttgaaagaaaacgtgattgtgggccgtctg
attcctgcgggtacgggcttgagctaccaccgcagccgccgtgccgcatggcagcagctg
cagcgtacggcagacacgtccgatagcgaagcggcagaagctgccgaataa
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