Conchiformibius steedae: H3L98_02360
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Entry
H3L98_02360 CDS
T06730
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cste
Conchiformibius steedae
Pathway
cste03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cste00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H3L98_02360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cste03019
]
H3L98_02360
Enzymes [BR:
cste01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H3L98_02360
Messenger RNA biogenesis [BR:
cste03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H3L98_02360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
UvrD-helicase
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QMT33894
LinkDB
All DBs
Position
complement(394753..396099)
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AA seq
448 aa
AA seq
DB search
MDIKTNAFTALGLGRELSDALNERGYHTPTPIQEAAIPKVLAGHDLLAAAQTGTGKTAAF
MLPALERLKRYANTSTSPAMHPVRMLVLTPTRELADQIDQNVVNYIKYLPLKHTVLFGGM
NMDAQTHALRAGSEIVIATVGRLLDHVKQKNIQLNKVEILVLDEADRMLDMGFIDDIRTI
MNLLPKQRQTLLFSATFAPAIRKLAQDFMNRPETVQTAAQNTTNANVEQHIIAVDAARKR
ELLERLIVDLEMNQVIVFCKTKHSAEQVSRDLQRRGLQARAIHGDKTQQNRLETLTQFKE
GQVRVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDGDE
QKMYEAIQNLIGSELSVSRIEGFEPQWQQSNHSPEISHTRRAPDNSTNRTPQPAVHPKKD
TAPPRPTRRRGRERRSCALLQANFGVEK
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggacataaaaaccaacgcctttaccgctctgggtttggggcgagaattaagcgatgcc
cttaacgaacggggctaccacacccccacccccatacaagaagccgccattcccaaagta
ttggcaggacacgatttacttgccgccgcccaaaccggcacaggcaaaaccgccgctttt
atgctgcccgcattagaacgcctcaaacgctatgccaataccagcacctcgcccgccatg
caccccgtacgtatgctggtgctgacccccacccgcgagcttgccgaccaaattgaccaa
aacgttgtcaattatattaaatacttaccgctcaaacacaccgtattgttcggcggcatg
aatatggacgcacaaacccacgccctacgcgcaggcagcgaaatcgttatcgccaccgta
ggacgtctgcttgaccacgtcaaacaaaaaaatatccaattaaataaagtagaaattttg
gtgctggacgaagccgaccgcatgttggacatgggctttattgacgacatccgcaccatt
atgaacctgctgcccaagcagcggcaaaccctgctgttttccgccacctttgccccagcc
atccgcaagctggcgcaagactttatgaaccgtcccgaaaccgtacaaaccgccgcgcaa
aacaccaccaatgccaatgtagaacaacacattatcgccgttgatgccgcacgcaaacgc
gaactgcttgaacgtttgatagtagatttagaaatgaatcaagtaatcgtgttttgcaaa
accaaacacagcgccgaacaggtatcacgcgatttgcagcggcgcggtttgcaggcacgc
gccattcacggcgacaaaacccagcaaaaccgtttggaaacgctgacccaatttaaagaa
ggacaagtgcgcgtgttggtggcaaccgatgtcgccgcgcggggtttggacattgccgaa
ctaccgtttgtgattaattacgaactgcccacccagcccgaagactacgttcaccgcatc
gggcgcacaggacgcgcaggtgcagacggcgttgccatttcactgatggacggcgacgaa
caaaaaatgtatgaagccattcaaaacctgattggcagcgaattaagcgtttcgcggatt
gaagggtttgaaccgcaatggcagcagtcaaaccacagccccgaaatttcccacacacgc
cgcgcacccgacaacagcaccaaccgcacaccgcaacccgcagtccaccccaaaaaagac
accgctcccccgcgccccacccgccgccgcggacgcgagcgccgttcctgcgccttactg
caagccaattttggtgtggaaaaatag
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