Conchiformibius steedae: H3L98_03030
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Entry
H3L98_03030 CDS
T06730
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cste
Conchiformibius steedae
Brite
KEGG Orthology (KO) [BR:
cste00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cste03016
]
H3L98_03030
Enzymes [BR:
cste01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
H3L98_03030
Transfer RNA biogenesis [BR:
cste03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
H3L98_03030
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QMT34004
LinkDB
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Position
527780..529651
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AA seq
623 aa
AA seq
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MHIFYEEGGQFKTAAVVQKNDSTYQADTAHGKRVKIKAANVFLELDGDAAAFLAQARAEA
DTVDIPLLWEVSGTEEFTAAAAAAEYYGEQPSKAQTAAVLMALYDAPLYFHKKAKGVFKA
APADILQQALAAAERKRQIEAQIEQWRSELLAGQLPAAVAAEIRAILHQPDKQSPAYKAF
ATAADSQKISLYELAKRTGAVSGLPEYLQQRFEYRYFPQGIGFGDVSAPQLPPLSEADST
VRAFSVDDASTTEIDDALSVRHLDNGITRVGIHIAAPALAVAADSEIEKIIMQRLSTVYF
PAGKITMLPESWISAFSLDEGALRPAFSAYFDFDGDFNLLNVSHRIERVWIEHNLRIHAI
EPYFNSETGIGSADAPQFPFHAEMIWLHALAQALQKQRDRYEENPVKKYDYGIELDETGR
VSISKRERGSPIDTVVSEMMILANSTWAQMLDEHQLGGLFRVQPSGRVRMATQADTHIGM
NLSHYGWFTSPLRRAADYINQKQLQSLLNPDCEPRFSANDAMLFAAVSNFDNTYNAYRDF
QNSMEAYWSLVYLQQENISEMNAQVLKEDLVRLEGVPLVARATGIPAEIPPKSTVKLAVT
EVDSEQQFVGLRYLAPVAPPPAQ
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgcatattttttacgaagaaggcggacagtttaaaaccgccgccgttgtccaaaaaaac
gacagcacctatcaggcagacaccgcccacggcaaacgggtgaaaattaaagccgccaat
gtgtttttggaattggacggcgatgccgccgcctttttagcgcaagcccgcgccgaagcc
gataccgtagatattccgctgctgtgggaagtgtcgggaacggaagagtttaccgccgct
gccgccgccgccgaatactatggcgaacaaccgagcaaagcgcaaaccgccgccgtgtta
atggcgttatacgatgcgccgctgtattttcacaaaaaagccaaaggcgtgtttaaagcc
gcgcccgccgatattttgcagcaggcattagctgccgccgagcgcaaacgtcaaattgaa
gcccaaatcgaacaatggcgcagcgaactgttagcagggcaactgcccgctgccgttgcc
gccgaaatccgtgccattctgcaccagcccgacaaacaaagtcctgcctacaaagccttt
gccactgctgccgacagccaaaaaatcagcctgtacgagttagccaagcgcacgggcgca
gtatcgggtttgcccgaatatttgcaacagcgttttgaataccgttatttcccgcaaggc
attggttttggcgacgtgtctgccccgcaactgccgccgctgtccgaagccgacagcacg
gtacgcgccttttcggtagatgatgcgtccaccaccgaaattgacgatgccctcagcgtg
cgccatctcgacaacggcatcacccgtgtcggtattcacattgccgcgcccgcgcttgcc
gtggctgccgacagcgaaattgaaaaaatcattatgcagcgtttgagcaccgtgtatttt
cccgcaggcaaaatcaccatgttgcccgaaagctggattagcgcgttcagtttggacgaa
ggcgcattgcgccccgcatttagtgcctattttgattttgatggcgacttcaatttatta
aacgtttcccaccgcatcgagcgcgtgtggattgaacacaacctgcgtattcacgccatt
gagccttatttcaacagcgaaacaggcattggcagtgccgatgcgccgcagttccccttt
catgccgaaatgatttggctgcacgctttggcacaggcattgcaaaaacagcgcgaccgt
tatgaagaaaatcccgtcaaaaaatacgattacggcattgaactagacgaaacagggcgc
gtatccatcagcaaacgcgagcgcggttcgcccattgataccgtagtcagcgaaatgatg
attctggcaaacagcacttgggcgcaaatgctggacgaacaccaattgggcggattgttc
cgagtgcaaccttcggggcgtgtacgcatggcaacgcaggcagacacccatatcggcatg
aatttaagccattacggttggtttacctcgccgctgcgccgcgccgccgactacatcaac
caaaaacaactgcaaagcttgcttaatcccgattgcgaaccgcgctttagtgccaacgat
gccatgctgtttgccgctgtcagcaattttgacaatacctacaatgcttaccgcgatttt
caaaacagcatggaagcctattggtcgctggtgtatttgcagcaagaaaacattagcgaa
atgaacgcacaagtattaaaagaagatttggtgcgtttggaaggcgtgcctttggtggcg
cgggcaacgggtattcctgccgaaattccgcccaaaagcacggtaaaattagccgttacc
gaagtggattcggaacagcagtttgtcggattgcgctatcttgcccccgtagccccgcca
cccgcacaatga
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