Conchiformibius steedae: H3L98_07155
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Entry
H3L98_07155 CDS
T06730
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cste
Conchiformibius steedae
Pathway
cste03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cste00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H3L98_07155 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cste03400
]
H3L98_07155 (mfd)
Enzymes [BR:
cste01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H3L98_07155 (mfd)
DNA repair and recombination proteins [BR:
cste03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H3L98_07155 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
AAA_30
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QMT32891
LinkDB
All DBs
Position
complement(1348707..1352096)
Genome browser
AA seq
1129 aa
AA seq
DB search
MTTDFPLPQPQRKADWTQLSSGSLPFLLAQHLPAQGTHLILTADNNQAHRLHQAWQFFRP
QDHALFFPDWETLPYEHFSPHQDLVSERLSALWQLKHGLVNALFVPVATAMQYLPPPSFL
LGRTFRVQKGMNLPIDTLRTNLVEAGYHHVSNVLSAGEFAVRGGMADVFPMGSSEPYRLE
WFDNEIDSIRTFNPESQRSLAAVDEIRLLPAHEFPTDAPEVFRRRFREEIEGDPSAAVVY
NAVGKGQFGAGAEYYLPLFFDEACATLFDYAGENALIVCAADVHDCAQTFWADANARFRL
AQGDSAYPPLPTARLWLAPDRFAAAIKPLANIRIRAADSRHNLPEIAVNRQSKTPLTALQ
QFCDGFDGRVLVCADSLGRRETMGAFFRQQGLHAKAAADWQHFLHDDAPLMLAAAPLAES
FQLPEQRLAVVTESELYQYIARTPVRRRKHAAVSDGALRDLAEISVGDPVVHQEHGIGRY
AGLVNMDFGDGDSEMMLLEYAGGSQLYVPVAQLHLISRYAGGKHENVSLHKLGNSAWGKA
KRKAAEKARDTAAELLDLYARRAAQQGYAVDLDVEAYQAFADGFGYEETEDQAAAIAAVL
RDLSHSKPMDRLVCGDVGFGKTEVALRAAFAAVMGGRQVAVLAPTTLLVEQHAKNFAGRF
ADFPVKVGVLSRFNQSKETQATLAGMADGTVDIVIGTHKLIQDNIAFKNLGLVIIDEEHR
FGVRQKEQLKQLRANVDLLTLTATPIPRTLSMALDGLRDFSLIATAPSRRLAVKTFVKPF
SEAGIREAVLRELKRGGQVFFLHNEVETIENMREKLETLLPEARIGVAHGQLRERELEQR
MRQFLQQQFNVLLCSTIIETGIDIPNANTIIINRADRFGIAQLHQLRGRVGRSHHQAYAY
LLTPESISKDAEKRLDAIASADELGAGFSLAMQDLEIRGAGEILGEGQSGDMMQVGLTLY
TEMLKQAVRDLKKGRVPDLDAPLGVSTEVKLHAPALLPESYCPDVHERLVLYKRLAAAET
NKQINEIHEELVDRFGLTDAHPPVQTLLESHRIRLMAQDLGIDSVDVSATAATLNFSKNT
SVSPAAVIALMQSGRHYRMLGADKLRLDSPMPEVQQRIETAKTLLRKLL
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccgatttccccctaccacagccgcaacgcaaagccgattggacacaactttct
tcaggcagtttgccgtttttgctggcgcaacacctgcccgcacaaggcacgcacctgatt
ttaaccgccgataacaatcaggcgcaccgtttgcaccaagcgtggcagtttttccgcccg
caagaccatgccttattttttcccgattgggaaactttgccttacgaacatttttccccg
catcaggatttggtttcggaacggctgtcggcgttgtggcaattaaaacatggtttggtc
aatgcgctgtttgtgcctgtggcaacggcaatgcagtatctgccgccgccgtcttttctg
ctggggcgcacgttccgcgtgcaaaaaggcatgaatttacccattgacacgctgcggaca
aatttagtggaagcgggttatcatcatgtttccaatgtgttaagcgcgggcgaatttgcc
gttcgtggcggcatggcagacgtgttcccgatgggtagcagcgagccttaccgcttggaa
tggtttgacaacgaaattgacagcattcgcacctttaatcccgaaagccagcgcagtttg
gcggcggtggacgaaatccgtttgctgcccgcgcacgaatttcccaccgatgcacccgaa
gtgttccgccgccgttttcgtgaagaaatagaaggcgacccgtctgccgctgtggtgtat
aacgctgtaggaaaaggacaatttggcgcgggcgcagaatattatctgcctttgtttttt
gatgaagcatgtgccacgctgtttgattatgcgggcgagaacgcgctgattgtatgcgcc
gccgatgtgcatgattgcgctcaaactttttgggctgatgccaatgcgcgttttcgtttg
gcacagggcgacagtgcttatccgccgctgccgacagcgcgtttgtggcttgcccccgac
cgttttgccgccgccatcaaacccttggcaaacatacgcatacgcgctgccgacagccgc
cacaatctgcccgaaattgccgtaaaccgtcagtccaaaacgcctttgacggcgttgcag
caattttgtgacggatttgacgggcgcgtgttggtgtgcgccgacagcttgggacggcgc
gaaaccatgggcgcgtttttccgtcagcagggtttgcacgccaaagccgctgccgattgg
caacattttctgcacgatgatgcgcctttgatgttggcagctgcgccgttggcagaaagt
ttccaattgcccgaacagcgtttggcagtcgttaccgaaagcgaattgtatcaatacatt
gcccgcacacccgtgcgccgccgcaaacacgccgccgtatcagacggtgcattgcgcgat
ttggcagaaatcagcgtgggcgaccccgtggtgcatcaggaacacggcatcggacgttat
gcgggcttggtcaacatggattttggcgatggcgacagcgaaatgatgttgttggaatac
gcaggcggttcgcaattgtatgtgcctgtggcgcaactgcatttaatcagccgttacgca
gggggaaaacacgaaaacgtcagcctgcacaagctgggcaacagcgcgtggggcaaagcc
aaacgcaaagccgccgaaaaagcccgcgacactgccgccgagctgttggatttgtacgcc
cgccgcgccgctcaacaaggttacgccgttgatttggatgtggaagcctatcaagccttt
gccgacggtttcggctatgaagaaaccgaagaccaagccgccgccattgccgccgtgttg
cgtgatttaagccacagcaaacccatggacaggctggtgtgcggcgatgtcggttttggc
aaaaccgaagtggcgttacgcgccgcctttgccgccgtgatgggcggacgacaagtcgcc
gtactcgcccccaccaccttgctggtggaacaacacgccaaaaactttgcgggacgtttt
gccgattttcccgtaaaagtgggcgtgttgtcgcgttttaaccaaagcaaggaaacccaa
gccactttagcaggcatggcagacggcacagtggatatcgtgattggcacacacaaactg
attcaagacaatatcgcctttaaaaatctaggcttggttattattgacgaagaacaccgt
tttggcgttcgtcaaaaagaacaattaaaacaactgcgcgccaatgtggatttgctcacc
cttaccgccacgcccattccacgcaccttaagcatggcattggacggactgcgcgatttt
tccctgattgccaccgcacccagccgccgcctagccgtgaaaacctttgtcaaacccttt
agcgaagcaggcatacgcgaagccgtgttgcgcgaattaaagcgtggcggacaagtgttt
tttctgcacaacgaagtagaaaccattgaaaatatgcgtgaaaaactggaaacgctgttg
cccgaagcccgcatcggcgtggcacacggacaattgcgcgaacgcgaattggaacagcgt
atgcgccagtttttacaacagcaattcaatgtgttgctgtgttccaccattattgaaaca
ggtattgacattcccaatgccaacaccattatcatcaaccgcgccgaccgtttcggcatc
gcccaactgcaccaattgcgcggacgggtcgggcgcagccaccaccaagcctatgcctat
ctgctcacgcccgaaagcatcagcaaagatgcagaaaaacgtttggacgccattgcctcg
gcagacgaattgggcgcaggtttcagcttggcaatgcaggatttggaaattcgcggcgca
ggcgaaattttgggcgaaggacaaagcggcgacatgatgcaagtgggtttgacactctat
accgaaatgctcaaacaagcggtgcgcgatttgaaaaaagggcgcgttcccgatttggac
gcgcctttgggggtcagcaccgaagtcaaactgcacgcgcccgcgctgttgcccgaaagc
tactgccccgacgtgcatgaacggctggtgctgtacaaacgccttgccgccgccgaaacc
aacaaacaaatcaatgaaatccacgaagaactggttgaccgcttcggcttaacagacgcg
catccgcccgtgcaaacgctgctggaaagccaccgcatccgcttaatggcgcaagatttg
gggattgacagcgtggacgtgtcggctaccgccgccaccttaaactttagcaaaaacacc
agcgtgtcgcctgctgcggtgattgcgctgatgcagtcgggacgacattaccgtatgctg
ggtgcagataagctgcgtttggattcgccgatgcccgaagtgcagcagcgcattgagaca
gcgaaaaccctgctgcggaaattattgtga
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